PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_022972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Nin-like | ||||||||
Protein Properties | Length: 909aa MW: 100720 Da PI: 6.4441 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92 | 4.3e-29 | 592 | 642 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI RWP+Rkik++ DCAR_022972 592 DKNITLDMLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGITRWPSRKIKKV 642 599**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.450.40 | 1.3E-4 | 214 | 291 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.541 | 581 | 662 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.7E-26 | 594 | 642 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 1.2E-21 | 809 | 893 | No hit | No description |
SuperFamily | SSF54277 | 2.45E-22 | 809 | 896 | No hit | No description |
PROSITE profile | PS51745 | 26.802 | 811 | 894 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.9E-23 | 811 | 894 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.9E-16 | 812 | 893 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.26E-37 | 813 | 893 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
MGDASFPPNN NMLYTSPDPV MDLDLDELLF DGCWLEANDG SEFFNQSPPP FDPSFLWSSM 60 ENYNGDFNWT SVPKDSQEER QRSSYPGNLS ISQPPNQIQG LGNDMLTSTS HIGNYSVEGS 120 QLGSNLWIGP RPIHGRAMSV MDRVVRALEY FKSSTRDTDV LLQLWVPIDR GGRRVLSTCG 180 QPFSLDSNSP RLANYRAISV KYQFSAEHDS KEVEGMPSRV FMGKVPEWTP DVRFYKREEY 240 QRVRHAQQYD VRGTLAVPVF EQGTCLGVIE IVTTSQKINY KPELESVCEA LKAVDLRGSE 300 VASTHSMKIC NGSYQSALPE IMEVLRCTCE TNRLPLAQTW IPCVQQGKEG CRHSDENIIN 360 CVSTLDSACY IAEPSIRGFH EACSEHHLLR GQGVVGKAFM SNQPSFSPDV TSDSKTEYPL 420 SHHARMFGLC AAVAIRLRSI YTGTSDFVLE FFLPVNCRDP EDQKILLNAL SIVIQKVCHS 480 LRIVTDTELH EETLMRAGKA VVPSADRLGK QEIAEVENSA KSSHEVSFRT SSNMEMQESK 540 PRELTESASS PSQYQQISAD GHVTFNQDLC ASGRGSYSSV GKTGEKRRGK TDKNITLDML 600 RQYFAGSLKD AAKSLGVCPT TLKRICRQHG ITRWPSRKIK KVGHSLQKIQ GVIDSVQGAS 660 GGFQIKSFYS NFPELASPNS SKHILLTASK PIGNSSQNEG SALSPEAVAS KSPPSSCSQS 720 SNSSHCYSSG TQAQPCNLNG LNNEDQVGCN PGEGILKRAT SAVHLHASTH DVPKVLSRSQ 780 SYKNLIRQPR TESPSRLPND IGENIPEGDS TSRVKVTYGE EKIRFRMLNS MTYDDLLVEI 840 TKRFCIDDRT GFHLKYLDDD SEWVLLTCDD DLEECREVCE SAHSQTIKLS LHQNPTQHLG 900 SSYGSSQL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017258329.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
Refseq | XP_017258330.1 | 0.0 | PREDICTED: protein NLP5-like | ||||
TrEMBL | A0A164V155 | 0.0 | A0A164V155_DAUCS; Uncharacterized protein | ||||
STRING | evm.model.supercontig_26.186 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_022972 |