PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022910
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 309aa    MW: 34532 Da    PI: 8.2653
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022910genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18226259134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C + kTp+WR gp g+ktLCnaCG+++++ +
  DCAR_022910 226 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGR 259
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-785305IPR016679Transcription factor, GATA, plant
SMARTSM004011.5E-12220274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055220256IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-13224283No hitNo description
Gene3DG3DSA:3.30.50.101.3E-13224257IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.08E-13225274No hitNo description
PROSITE patternPS003440226251IPR000679Zinc finger, GATA-type
PfamPF003209.3E-16226259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEYCMEARAL KSSLLSQVAM KSSTQQVFIA DDDVWCVTGL NNVTCDDFSV DDLLDFSDKD  60
FKETFEEKHS SVSVDDDNNS SNSANSPTSA DFAGQLTVPV DEKENLEWLS QFVDDSVSGV  120
SLLCSAGGHR SEQDRKRFTV LDLPNPVHKK PRTKRFRTIG KAWSHGLLFL TMSFSTSMCS  180
YQDSTPSYPV QVMDSFGSVQ KPPAKKPRKV TAGESSFSGP QTFRRCSHCL VQKTPQWRTG  240
PLGPKTLCNA CGVRFKSGRL FPEYRPACSP TFSGDVHSNS HRKVLEMRRK KETVEKVETR  300
FMPMVRSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255037.10.0PREDICTED: GATA transcription factor 5
TrEMBLA0A164V2N60.0A0A164V2N6_DAUCS; GATA transcription factor
STRINGXP_009631302.18e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-49GATA transcription factor 5