PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022744
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 1002aa    MW: 109504 Da    PI: 4.9528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022744genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-182381357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  DCAR_022744 23 KYVRYTAEQVEALERVYMECPKPSSLRRQQLIRECprlaNIEPKQIKVWFQNRRCREKQ 81
                 5678*****************************************************97 PP
2START164.48.3e-521623672202
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee++ e+++ka+ ++  Wv+++ +++g++++ +f+ s++++g a+ra+g+v  ++a+ ve+l d++  W++++++ e+   + sg  g+++l +++
  DCAR_022744 162 VAEETLSEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCNGVAARACGLVSLEPAKIVEILKDRP-AWSRDCRRLEVFSMLPSGngGTIELVYTQ 258
                  7899******************************************************9999999999.***************************** PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l  g+ v++++Sv+     p+   s+++vR+e+lpSg+l++p+++g+s +++v+h +l++++++++lr+l++s+ + 
  DCAR_022744 259 MYAPTTLAPaRDFWTLRYTTSLDNGSIVVCERSVSGSGAGPNaaaSAQFVRGEMLPSGYLVRPCDGGGSIIHIVDHLNLEAWTVPEVLRPLYESSKVV 356
                  ***********************************999999999****************************************************** PP

                  HHHHHHHHTXX CS
        START 192 gaktwvatlqr 202
                  ++k++ a+l++
  DCAR_022744 357 AQKITIAALRY 367
                  ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371882IPR001356Homeobox domain
SMARTSM003899.1E-142086IPR001356Homeobox domain
SuperFamilySSF466893.17E-162184IPR009057Homeodomain-like
CDDcd000868.74E-162383No hitNo description
PfamPF000461.4E-152481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-172581IPR009057Homeodomain-like
CDDcd146866.03E-675114No hitNo description
PROSITE profilePS5084827.764152380IPR002913START domain
CDDcd088751.42E-69156370No hitNo description
SMARTSM002348.2E-42161371IPR002913START domain
PfamPF018522.1E-49162368IPR002913START domain
Gene3DG3DSA:3.30.530.205.1E-20162344IPR023393START-like domain
SuperFamilySSF559611.37E-34162373No hitNo description
PfamPF086701.7E-46697837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MDMAVSNRDS NGGSITKHLD NGKYVRYTAE QVEALERVYM ECPKPSSLRR QQLIRECPRL  60
ANIEPKQIKV WFQNRRCREK QRKESSRLQT VNRKLSAMNK LLMEENDRLQ KQVSQLVCEN  120
GYMRQTLQNV PTVTTDVSCE SVVTAPQHSL RDANNPAGLL SVAEETLSEF LSKATGTAVD  180
WVQMPGMKPG PDSVGIFAIS HSCNGVAARA CGLVSLEPAK IVEILKDRPA WSRDCRRLEV  240
FSMLPSGNGG TIELVYTQMY APTTLAPARD FWTLRYTTSL DNGSIVVCER SVSGSGAGPN  300
AAASAQFVRG EMLPSGYLVR PCDGGGSIIH IVDHLNLEAW TVPEVLRPLY ESSKVVAQKI  360
TIAALRYIRQ VAQENNGEVI YGLGRQPAVL RTFSQRLSRG FNDAINGFSD DGWSVMNCEG  420
SEDVIVAENS LKNLFSTSNQ SHSISMVGGV LCAKASMLLQ NVPPAVLVRF LREHRSEWAD  480
FSIDAYSAAS LKGSSYAYPE MRPTRFTGSQ IIMPLGQTIE HEEMLEVIRL EGYPLSQEDA  540
FMSRDIHLLQ LCSGVDESAV GACSELVFAP IDEMFPDDAP LLPSGFRIIP LDSKSGDVQD  600
SLTTNRTLDL ASSLEVGPGT NHNAGDSSTC YSMRSVLTIA FQFPYENHQA DSVATMARQY  660
VRTVVSSVQR VAMAISSSGT SPAAGPKLSS GAPEAQTLAN WICQSHRYHL GTDLFSSDSV  720
GGDTLLKNLW HHQDAILCCS LKSLPVFIFA NQAGLDMLET TLVALQDITL DNIFNDTGRK  780
ALYSEFPKIM QQGFAYLPGG VCLSTMGRHV SYEQAIAWKV LAAEENTVHC LAFSFVNCDD  840
LFGDGPITES VGCEHSNGEA DSRSSLNPFE DYRNSGLDLA NAVEKVLAPV SSMSSRVMLP  900
NGTLTSTSET LAESNSFQRT AAAGHSLFQE DVEFVGAELE GTEKAMQQAF KEGIVGEAGP  960
LKRNIIPNIV AEENSDDTGT RMKEFNDANH WRVDQEVAVL E*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214964.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A161XBD20.0A0A161XBD2_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]