PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022694
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 551aa    MW: 61209.3 Da    PI: 6.3276
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022694genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS244.54.4e-751655422374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                  ++lL  cA a+++g+l+++q+lL  l+elas++gd+++Rla++ ++AL ++l+   s++y+a  ++ + ++ +      +l  f+++ P++++ + +a
  DCAR_022694 165 EQLLNPCAIAITAGNLNRVQHLLYVLHELASSTGDANHRLASHGLQALTRHLSP--SHTYSASaTTMNFASAKPRFFKESLINFNDINPWFTIPNNIA 260
                  689**************************************************9..677765523444443334444444444*************** PP

         GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183
                  N+ Il+ ++++   + +Hi+D+++s+G+QWp L++ L+ Rp ++pp +R+T++++  s+               +   +L+ +A++l+v++++n +  
  DCAR_022694 261 NSSILQILSQQnssSNLHIVDIGVSHGVQWPILIDGLTRRPgGPPPLVRLTVIAPVVSNnqsldtpfaVGPPDYNFIPQLTAYAKTLNVNLHINRIEN 358
                  ********999777889************************55566******998766666677776644444566689****************999 PP

         GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklpre 278
                  ++l++l+ + L ++++E+l+V+ ++++h+l    ++ ++ r+++Lk+++sl+Pk v+++e+++d+   n ++F+++f++ +ey++ ++ds++a +   
  DCAR_022694 359 HSLQSLNAQVLGCSSDETLIVCAQFRVHQLN---HNNPDDRTKFLKVLRSLEPKGVILSENDMDCscnNCGNFATGFSRRVEYMWRFLDSTSAAY--- 450
                  9*****************************8...66666778*******************9776546778********************7774... PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   + r + Er++++ e  ++++++g++    + ++ekW e ++++GF+   ++e+a++ a+ ll+k++ ++++rvee++ ++ l Wk++p+ ++S W+
  DCAR_022694 451 -KGRDSEERRMIEGETAKALSNAGEM----NDRKEKWCEIMRRVGFSGEVFGEDAVDGARVLLKKYDsNWEMRVEEKDRCAGLWWKGQPVSFCSLWT 542
                  .6666677777777899999999999....77788********************************9999*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.062138521IPR005202Transcription factor GRAS
PfamPF035141.5E-72165542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MTLEEPEPEP NPTSDYTLDW MEGSLSYLPS FFEDPYSSGD PYSSGDLNDD SWLDIGQDLD  60
QELLNTSLAS INYNSTSTTT TATSTPLIHP VVSGQKKRKI SDEPNQKPSQ PNKRSQNRPN  120
NEPDDGNQTV LDQGVPKKGG NRRGSGKIVG SNCSNGNNKE GRWAEQLLNP CAIAITAGNL  180
NRVQHLLYVL HELASSTGDA NHRLASHGLQ ALTRHLSPSH TYSASATTMN FASAKPRFFK  240
ESLINFNDIN PWFTIPNNIA NSSILQILSQ QNSSSNLHIV DIGVSHGVQW PILIDGLTRR  300
PGGPPPLVRL TVIAPVVSNN QSLDTPFAVG PPDYNFIPQL TAYAKTLNVN LHINRIENHS  360
LQSLNAQVLG CSSDETLIVC AQFRVHQLNH NNPDDRTKFL KVLRSLEPKG VILSENDMDC  420
SCNNCGNFAT GFSRRVEYMW RFLDSTSAAY KGRDSEERRM IEGETAKALS NAGEMNDRKE  480
KWCEIMRRVG FSGEVFGEDA VDGARVLLKK YDSNWEMRVE EKDRCAGLWW KGQPVSFCSL  540
WTIDRKLNQK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3016154184472Protein SHORT-ROOT
5b3h_B3e-3016154130418Protein SHORT-ROOT
5b3h_E3e-3016154130418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254416.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A161XBH30.0A0A161XBH3_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-127GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]