PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022654
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 356aa    MW: 39767 Da    PI: 4.7712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022654genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-1992141255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++  +++++g
  DCAR_022654  92 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDSEARRIRG 141
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2292150IPR016177DNA-binding domain
CDDcd000183.79E-3292150No hitNo description
Gene3DG3DSA:3.30.730.101.8E-3192149IPR001471AP2/ERF domain
PROSITE profilePS5103224.11892149IPR001471AP2/ERF domain
SMARTSM003802.8E-3792155IPR001471AP2/ERF domain
PRINTSPR003672.2E-1193104IPR001471AP2/ERF domain
PfamPF008479.3E-1293141IPR001471AP2/ERF domain
PRINTSPR003672.2E-11115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MCGGAIISDL AAPPRRSSRR LTADVLWNDK TTQKNPGNYY SKPLRSIRLD DDFEADFQGF  60
YDQLSPPALN FSAASETNDE EDKSSKKKRK NQYRGIRQRP WGKWAAEIRD PRKGVRVWLG  120
TYNTAEEAAR AYDSEARRIR GRKAKVNFPV GVAPPAVNHS TEANIHKSVL AKPALNPDFN  180
LMNYLDSDHY DSFSFVEEKP KLNGCDNSYL AKTDAELNPK VSSDSASHYF SSDQGSDSYE  240
QSDFAWGDNS FKTMEVTSLS TLKCDGAQYL EDGSPCKKQK PDSMAFVLCE ETIEKKPEEI  300
PNFETEMKFL QMAFMDGNWD ASLDAFLAED TALNGGNPID LWAFDELPTT TGGAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2091152163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2092152566ATERF1
3gcc_A2e-2092152566ATERF1
5wx9_A1e-19911491372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017259035.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A164V8W10.0A0A164V8W1_DAUCS; Uncharacterized protein
STRINGXP_009357901.11e-111(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-53related to AP2 12