PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022542
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24054.5 Da    PI: 9.2273
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022542genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.9e-241663249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +ie k n qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk++ +
  DCAR_022542 16 KIERKNNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKVFSF 63
                 6999*****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.259767IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-33766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-28882IPR002100Transcription factor, MADS-box
CDDcd002651.96E-35875No hitNo description
PRINTSPR004044.6E-20929IPR002100Transcription factor, MADS-box
PfamPF003199.9E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAKKPSLGRQ KIKIAKIERK NNLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKV  60
FSFGHPNVES IIDRFFTRNP PLNSNSTLHL VEVHRNASVR ELNFQLTQIL HELESERQGG  120
ETLDQMRKAS QGQFWWESPV EKLALHELEQ LRDSMEELKR NVTDQANKIL VENVNALPLL  180
GDNALRSFDQ FEAKPAELNV SNNFGYGTVG FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17792186MEF2C
5f28_B8e-17792186MEF2C
5f28_C8e-17792186MEF2C
5f28_D8e-17792186MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256523.11e-104PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-58AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A161XBX51e-154A0A161XBX5_DAUCS; Uncharacterized protein
STRINGXP_009628464.11e-101(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-60AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]