PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022541
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23376 Da    PI: 8.9608
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022541genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.79.7e-211762449
                 -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 + +sn  vtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  DCAR_022541 17 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGRKVFSF 62
                 6788999********************************9999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-27665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.404666IPR002100Transcription factor, MADS-box
CDDcd002656.59E-32781No hitNo description
SuperFamilySSF554552.75E-25785IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221662IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKSKGRQK IVMAKMSKES NLLVTFSKRR SGLFKKASEL CTLCGVEIAI IVFSPGRKVF  60
SFGHPNVEQI LDKFLNAQDP SPTNSTTLQL VEAHRSASAR ELNLQLSELL TQLEELKNQG  120
EELMNLRKQR QDMFWWEAPV DDLRFEQLQI LKTGMEDLKR NIATHTQKLV LMEQALALAA  180
CGTRSAHSMT PLGCTLGYGS EHSIEYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-15789286MEF2 CHIMERA
6bz1_B3e-15789286MEF2 CHIMERA
6bz1_C3e-15789286MEF2 CHIMERA
6bz1_D3e-15789286MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256370.11e-154PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK25e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A164VBL41e-152A0A164VBL4_DAUCS; Uncharacterized protein
STRINGVIT_03s0088g00510.t015e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]