PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022480
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 361aa    MW: 39999.9 Da    PI: 8.5626
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022480genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.7e-53161461128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++   
  DCAR_022480  16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-SIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTTtss 112
                  79****************************.89***************999999***************************************99888 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  DCAR_022480 113 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 146
                  88889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-649183IPR003441NAC domain
PROSITE profilePS5100561.45716183IPR003441NAC domain
PfamPF023655.8E-2817146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MESTDSSAGS QQQPQLPPGF RFHPTDEELV VHYLKKKAAS VPLPVSIIAE VDLYKFDPWE  60
LPAKASFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTTT SSGGTQKVGV  120
KKALVFYGGK PPKGIKTNWI MHEYRLADNS KSTNMKPPGC DMGNNKKGSL RLDDWVLCRI  180
YKKNNSQRPL MEHESCESMN EMVFASIPGA SCLQIGQQHP KLMAGLKAST TTSYSAMLEN  240
EQSMLHNMIN NSDASISSKS HLSLPSPNNQ VMSIKRSMFW DEDGSGPSST HKRFLTDHQE  300
NQEDGRTVQD DSGSMASFLG QFPQTPQALQ QAAMLGNVGD GVFRQQPNYN QLPGSMNWYS  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-741318614168NO APICAL MERISTEM PROTEIN
1ut4_B2e-741318614168NO APICAL MERISTEM PROTEIN
1ut7_A2e-741318614168NO APICAL MERISTEM PROTEIN
1ut7_B2e-741318614168NO APICAL MERISTEM PROTEIN
3swm_A3e-741318617171NAC domain-containing protein 19
3swm_B3e-741318617171NAC domain-containing protein 19
3swm_C3e-741318617171NAC domain-containing protein 19
3swm_D3e-741318617171NAC domain-containing protein 19
3swp_A3e-741318617171NAC domain-containing protein 19
3swp_B3e-741318617171NAC domain-containing protein 19
3swp_C3e-741318617171NAC domain-containing protein 19
3swp_D3e-741318617171NAC domain-containing protein 19
4dul_A2e-741318614168NAC domain-containing protein 19
4dul_B2e-741318614168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257164.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ9LD441e-107NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A164VCV40.0A0A164VCV4_DAUCS; Uncharacterized protein
STRINGVIT_19s0014g03300.t011e-148(Vitis vinifera)
STRINGEOY128521e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-108NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]