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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | DCAR_022479 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | NAC | ||||||||
| Protein Properties | Length: 316aa MW: 35638 Da PI: 8.8647 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 168.1 | 2.9e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98
lp+GfrF Ptdeel+v+yL++kv+g++++l ++i+e+++yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+
DCAR_022479 14 LPAGFRFYPTDEELMVQYLCRKVAGQHFSL-QIIAEINLYKFDPWVLPSKAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIMS-EGR 109
799**************************9.89***************8777899***************************************.999 PP
NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128
+vg+kk Lvfy g+apkg+kt+W+mheyrl
DCAR_022479 110 KVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
****************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 1.57E-66 | 9 | 163 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 59.531 | 14 | 162 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.3E-25 | 15 | 139 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 316 aa Download sequence Send to blast |
MGVQQTDPLS QLNLPAGFRF YPTDEELMVQ YLCRKVAGQH FSLQIIAEIN LYKFDPWVLP 60 SKAMFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIIMSEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLS EPQRRNGSSK LDDWVLCRIY KKNSSAQKTL AATNASTEHS 180 HSHGSSSSCS SQFDDVMESL PQIDERFVDL PRMNSLNDWA AIAEQLAGAP VGNQTQALSS 240 NNNNNQNDLY FPCNLISRPG GFEARFKTSI EEEVESGFKN QTSEFMSFNG YSQCFGNDRL 300 AIRYPNLPGN VGFRQ* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3swm_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-111 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | GU565184 | 1e-150 | GU565184.1 Apium graveolens NAC transcription factor (NAC) mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017254745.1 | 0.0 | PREDICTED: NAC domain-containing protein 72-like | ||||
| Swissprot | Q9SQL0 | 1e-128 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
| TrEMBL | A0A164VCW8 | 0.0 | A0A164VCW8_DAUCS; Uncharacterized protein | ||||
| STRING | XP_006451940.1 | 1e-135 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3122 | 24 | 52 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT4G27410.2 | 1e-117 | NAC family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | DCAR_022479 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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