PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_022448

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

SRS

Protein Properties

Length: 336aa MW: 37153.9 Da PI: 7.9696

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_022448	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.4	2.7e-66	118	273	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........kskkqsalsstklssa 94 +++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrre+qqql+ +ss ++ +++++ +++++ + k ++++ l +t+l+++ DCAR_022448 118 SVNCQDCGNQAKKDCVHMRCRTCCKSRGFHCQTHVKSTWVPAAKRREKQQQLQLSSSLQQPQQDHEPQEQNQFSlmrgahqsKRTRENPLPCTRLQNH 215 689********************************************9999887766666544444444433444443223344444555565555 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + + le+ ++P+e+ s+avfrcv v+++dd++e++aYq+av+igGhvfkG+LydqG+e+ DCAR_022448 216 N--SGLEVGQFPAEITSSAVFRCVNVRAMDDAQEQYAYQAAVNIGGHVFKGLLYDQGPES 273 4..5688899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.0E-61	118	272	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-28	120	162	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.2E-25	223	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSGFFTLGGK DQEQDQASQE NSLFLFKNEE IYNKGFELWQ QYYQLHQQQK TQLQDVDLSL 60 VGGSASNYSS TRRTNDNDHT FLYRSSSSSG FGLHMRQSGV LGNNNNNSNN MIGGGGSSVN 120 CQDCGNQAKK DCVHMRCRTC CKSRGFHCQT HVKSTWVPAA KRREKQQQLQ LSSSLQQPQQ 180 DHEPQEQNQF SLMRGAHQSK RTRENPLPCT RLQNHNSGLE VGQFPAEITS SAVFRCVNVR 240 AMDDAQEQYA YQAAVNIGGH VFKGLLYDQG PESRYVGAGE NSTTSGAAQQ SLNLVTTAAT 300 TTNPPGVTWL DSSTTYPTPL NAFMAGTQFF PPPRP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257083.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	2e-71	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A164VDK3	0.0	A0A164VDK3_DAUCS; Uncharacterized protein
STRING	XP_009599252.1	2e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-54	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	DCAR_022448

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]