PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022404
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 307aa    MW: 34619.5 Da    PI: 4.8606
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022404genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-131764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  +    G g+W+ Iar  g+ R++k+c++rw +yl
      DCAR_022404 17 KGLWSPEEDDKLMSYMVGNGQGCWTDIARNAGLFRCGKSCRLRWINYL 64
                     678*******************************************97 PP
2Myb_DNA-binding45.12.3e-1470113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+el+++++  lG++ W+ Ia++++ gRt++++k+ w++
      DCAR_022404  70 RGSFSVQEEELIIHLHSILGNR-WSQIASRLP-GRTDNEIKNLWNS 113
                      899*******************.*********.*********9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-211167IPR009057Homeodomain-like
PROSITE profilePS5129416.1331264IPR017930Myb domain
SuperFamilySSF466895.47E-2715111IPR009057Homeodomain-like
SMARTSM007173.0E-101666IPR001005SANT/Myb domain
PfamPF002493.9E-121764IPR001005SANT/Myb domain
CDDcd001672.95E-82064No hitNo description
PROSITE profilePS5129423.87465119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2468120IPR009057Homeodomain-like
SMARTSM007172.1E-1369117IPR001005SANT/Myb domain
PfamPF002495.6E-1370113IPR001005SANT/Myb domain
CDDcd001671.21E-972112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRKPADQTEK ANNKLRKGLW SPEEDDKLMS YMVGNGQGCW TDIARNAGLF RCGKSCRLRW  60
INYLRPDLKR GSFSVQEEEL IIHLHSILGN RWSQIASRLP GRTDNEIKNL WNSTIKKRLK  120
NNHHMTSTTS PNSADPSVDI KSGEMISFQE HQLMSFCMDS MSSTTTTSSS SANYNFDPFL  180
PLNNSHDITT APPLPNASNC GVGDVIFEGY GGSEHYVMAP ENDLTVVSSL DNNDDPTFMF  240
DKKSFDDINM INSDHPRSIK VEDFEFENRE YLQGGQDIIR TGSDQLDWEG LLENISLTPY  300
LDFQIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28151195108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257411.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A164VEL40.0A0A164VEL4_DAUCS; Uncharacterized protein
STRINGEOX966931e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-65myb domain protein 83