PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_022323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 352aa MW: 40356.1 Da PI: 6.8786 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.5e-49 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++ vegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rdkky++g+r+nr+t+sgyWkatg d+ + +++ + DCAR_022323 23 MPGFRFHPTEEELVEFYLRRMVEGKRFNV-ELITFLDLYRYDPWELPAFAAIGEKEWFFYVPRDKKYRNGDRPNRVTTSGYWKATGADRMIRTENLRS 119 79***************************.89***************8777899******************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl DCAR_022323 120 IGLKKTLVFYTGKAPKGIRTSWIMNEYRL 148 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.615 | 22 | 169 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-55 | 22 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-24 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MSQNHHLDHK DDDEDEHEHD MVMPGFRFHP TEEELVEFYL RRMVEGKRFN VELITFLDLY 60 RYDPWELPAF AAIGEKEWFF YVPRDKKYRN GDRPNRVTTS GYWKATGADR MIRTENLRSI 120 GLKKTLVFYT GKAPKGIRTS WIMNEYRLPH HETERLQKAE ISLCRVYKRP GVEDHPSLPR 180 ILPTRASSSR TNPSTKRHDR DPPAQHHAME KLQVFGDQTV QQTSQKLSDT ISADSTTEDI 240 GTTSLCLSSQ NPSSSLLINS PNTIHDFHTL ISYHQASVNQ PHQFFPDTLQ LSANNVLQPA 300 QQLQSLTLAV FPAESAQSAY SDRVMWDWNS IPEATASRDH GAFLGRFSGS I* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257061.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q9ZVP8 | 1e-110 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A161ZRI5 | 0.0 | A0A161ZRI5_DAUCS; Uncharacterized protein | ||||
STRING | EOY26392 | 1e-136 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3888 | 24 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-112 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_022323 |
Publications ? help Back to Top | |||
---|---|---|---|
|