PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022156
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 348aa    MW: 39312.8 Da    PI: 4.8814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022156genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-16106156256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr++  +g + AeIr+p++   + + +lg++gt+eeAa+ ++ a+ +l+g+
  DCAR_022156 106 RYRGVRYRA-WGTFGAEIRHPTK---KEKLWLGTYGTPEEAARVYDTAAISLHGA 156
                  8*****999.**********864...6**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.21E-26105162No hitNo description
SMARTSM003801.0E-26106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-25106163IPR001471AP2/ERF domain
PfamPF008478.1E-9106155IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17106163IPR016177DNA-binding domain
PROSITE profilePS5103220.455106163IPR001471AP2/ERF domain
PRINTSPR003678.7E-7107118IPR001471AP2/ERF domain
PRINTSPR003678.7E-7129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNDCNVVLRE KFTQHMNLTR KLMKPLPGQR TKRFLRKIVR IIVTDHDATD SSSDEEAELY  60
DRRRVKKYHN VVLVEAGTDS TRKMEVSDDD HGGKRAKPVR DSSEKRYRGV RYRAWGTFGA  120
EIRHPTKKEK LWLGTYGTPE EAARVYDTAA ISLHGAKALT NFGNPSRKVE KQIFVQSNMS  180
NESMEGSYQN TLTSPTSGLR NENQPALEEA TDKGKGKEKV EVVEFSAEED GPCRKLNTMN  240
SYMPMDNLFE DDYGFGSMEP ITFDNLPIFP DEEMLKINYD DKDLGINLSF PIPLKKDRNF  300
LDNDGLDIGV DSGFSYEVIY GIGTTGSTSG VIDDYDFEDN DFSLATD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-15105162159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256471.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A161YCU30.0A0A161YCU3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-40cytokinin response factor 4