PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022047
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 332aa    MW: 37453.4 Da    PI: 8.5887
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022047genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP25.52.2e-082432571
      E2F_TDP 25 vtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 ++ ++++ +L    v   +RR+ D + +Le+++l++k++kn+++wkg
  DCAR_022047  2 IETHDACARL---GV--DKRRLRDFIVILESIGLLKKERKNHYSWKG 43
                 5667888899...99..9***************************98 PP
2E2F_TDP551.3e-1786166171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  rke+   lltqkf+kl+ +se + ++++e+a  L  +      +++k+ R+YDi+NVL ++n+i+k     +++  +rw+g
  DCAR_022047  86 RKENCIELLTQKFVKLFLCSELELISIDEAAILLNGDaqdpsLIQTKVKRLYDIANVLASMNIIQKtyqpeTKRFVFRWIG 166
                  789999****************************6669999956689*******************777666666677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013720.07143IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-9144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.3E-8243IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.8E-1784166IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-985155IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-2086166IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-1388166IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MIETHDACAR LGVDKRRLRD FIVILESIGL LKKERKNHYS WKGFGVLPKT FQLLQRGGLG  60
ESYTRLEDDE VSQVVEDGRG GKLDNRKENC IELLTQKFVK LFLCSELELI SIDEAAILLN  120
GDAQDPSLIQ TKVKRLYDIA NVLASMNIIQ KTYQPETKRF VFRWIGIRGE AEMATTNDLA  180
LKTKRRTIEN EATDTSAKRH MGDQSSKGTT SQTVVAPSQT PCEGRSPKKV VENDLEKGSI  240
PDIEKHRFGP SAPKTVPQDK PKSKNNIGTQ IQDWESLALT HRPQYHQHQG TASFFDELLQ  300
FFGALRDLFS HYRGAWNNYH SEVAGKDPAQ P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256498.10.0PREDICTED: E2F transcription factor-like E2FE
TrEMBLA0A164VMX50.0A0A164VMX5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.29e-58DP-E2F-like 1