PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022046
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 360aa    MW: 41146.5 Da    PI: 8.3553
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022046genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP482e-152085171
      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rkeks  ll+++fl+l+ + + +i+++++++ +L    v   +RR+ D + +Le+++l++k++kn+++wkg
  DCAR_022046 20 RKEKSFDLLCSNFLNLYDQDQGEIIEIHDACARL---GV--DKRRLRDFIVILESIGLLKKERKNHYSWKG 85
                 79********************************...**..****************************98 PP
2E2F_TDP57.13e-18128208171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  rke+   lltqkf+kl+ +se + ++++e+a+ L  +      +++k+ R+YDi+NVL ++n+i+k     +++  +rw+g
  DCAR_022046 128 RKENCIELLTQKFVKLFLCSELELISIDEAANILNGDaqdpsLIQTKVKRLYDIANVLASMNIIQKtyqpeRKRFVFRWIG 208
                  789999****************************7779*9*956689*******************777655555677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-181686IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-172085IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.87E-112083IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.2E-142185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-18126209IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-21128208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-14130208IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.62E-10133209IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAQLSANSTQ FNFRKPTYCR KEKSFDLLCS NFLNLYDQDQ GEIIEIHDAC ARLGVDKRRL  60
RDFIVILESI GLLKKERKNH YSWKGFGVLP KNFQLLQRGG LGESYTRLED DEVSQVVEDG  120
RGGKLDNRKE NCIELLTQKF VKLFLCSELE LISIDEAANI LNGDAQDPSL IQTKVKRLYD  180
IANVLASMNI IQKTYQPERK RFVFRWIGLR EEAEMATIND PVHKTKRRTI ENEPTNTSVK  240
KHMGDHESSK ATTSQTVVAQ SQTPCEVRSS KKVVENDLEK GSIPDMEKHR YGPFSPTIVS  300
QDKTKGKNNG TQIQDWESLA STHRPQYHQH QALRDLFSHY VGAWNFYHSE VAGKDPAQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-21202004228Transcription factor E2F8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256496.10.0PREDICTED: E2F transcription factor-like E2FE
TrEMBLA0A161YD180.0A0A161YD18_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.24e-72DP-E2F-like 1