PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022045
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 619aa    MW: 70646 Da    PI: 9.2836
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022045genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP44.72.2e-142085171
      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rkeks  ll+++fl+l+ + + ++++ ++++ +L    v   +RR+ D + +Le+++l++k++kn+++wkg
  DCAR_022045 20 RKEKSFDLLCSNFLNLYDQDRGEMIETHDACARL---GV--DKRRLRDFIVILESIGLLKKERKNHYSWKG 85
                 79*****************999************...**..****************************98 PP
2E2F_TDP52.11e-16128208171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  rke+   lltqkf+kl+ +se + ++++e+a  L  +      +++k+ R YDi+NVL+++n+i+k     +++  +rw+g
  DCAR_022045 128 RKENCIELLTQKFVKLFLCSELELISIDEAAILLNGDaqdpsLIQTKVKRFYDIANVLSSMNIIQKtyqpeTKRFVFRWIG 208
                  789999****************************6669999956689*******************777666666677776 PP
3E2F_TDP573.3e-18396476171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                  rke+  +lltqkf+kl+ +se + ++++e+a+ L  +      +++k+ R+YDi+NVL+++n+iek     +++  +rw+g
  DCAR_022045 396 RKENCIGLLTQKFVKLFLRSELELISVDEAANILNGDaqdpsIIQTKVKRLYDIANVLSSMNIIEKtyqpeTKRFVFRWIG 476
                  79999*****************************777****97778********************777666666677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-181786IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-152085IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.03E-92083IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.9E-132185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.4E-16126209IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-8127197IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-20128208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.4E-13130208IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013720.027280353IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-7319354IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.6E-6319353IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-18392476IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-22396476IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.6E-15398476IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.54E-9400477IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MAQLSANSTQ FNFRKLTYCR KEKSFDLLCS NFLNLYDQDR GEMIETHDAC ARLGVDKRRL  60
RDFIVILESI GLLKKERKNH YSWKGFGVLP KTFQLLQRGG LGESYTRLED DEVSQVVEDG  120
RGGKLDNRKE NCIELLTQKF VKLFLCSELE LISIDEAAIL LNGDAQDPSL IQTKVKRFYD  180
IANVLSSMNI IQKTYQPETK RFVFRWIGIR GQAEMATIND LALKTKRTIE NEPTNNGVKR  240
HMGDHSVVAP SQTPCEGRSP KKVVENDLEK GSGPDMKKHR FGPFAPTTVP QDKPQGKNNG  300
TQIQDWESLA STQRPQYHQH QGVDKRRLRD FIVILESIGL LKKERKNHYS WKGFGVLPKT  360
FQLLQRGGPG ESYTRFEDDE VSQALDDGRG DNSDKRKENC IGLLTQKFVK LFLRSELELI  420
SVDEAANILN GDAQDPSIIQ TKVKRLYDIA NVLSSMNIIE KTYQPETKRF VFRWIGIRGQ  480
AEMATINDPV LRTKRRTIEN EATNTSVKRH LGDQSEVAPS QTPCEGRSPR KVIENDLEKG  540
SIRDMEKHRF GPFAPTTVPQ DKPQGKNNGT QIHDWESLAS THRPQYHQHQ AMRDLFSHYR  600
GAWNFYHSEV AGKDPAQP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256498.10.0PREDICTED: E2F transcription factor-like E2FE
TrEMBLA0A161ZUU70.0A0A161ZUU7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.14e-60DP-E2F-like 1