PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_022022
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 306aa    MW: 34399.4 Da    PI: 6.7802
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_022022genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20165214255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  DCAR_022022 165 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDKAAIEFRG 214
                  59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-35164221No hitNo description
PfamPF008478.3E-14165214IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22165222IPR016177DNA-binding domain
PROSITE profilePS5103225.014165222IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-32165222IPR001471AP2/ERF domain
SMARTSM003807.9E-38165228IPR001471AP2/ERF domain
PRINTSPR003675.3E-12166177IPR001471AP2/ERF domain
PRINTSPR003675.3E-12188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MQNIYHQDLI ATVPNNHLPP LRLADDQEVS FMVNALRKVI FGGSATEMPP QFAFDNSPSS  60
FSSSSSSSGY SSTFVAQLEP NTCQYCRISG CLGCDFFVPP TEVTQQNQIF QTQMQSEESN  120
MYADVTPAPK SRSPVSSRSP VSVKKNNEAS SSSNIGVVQK KKKKNYRGVR QRPWGKWAAE  180
IRDPRKAARV WLGTFETAED AARAYDKAAI EFRGPRAKLN FSFADYTNNP IPNQQQQKTV  240
SPPPRQLQEE DSRKFETEME MGVNKEKEFW EVMADDEFKK WMMMMDYSNA DNSSDSTSGF  300
NVHSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-24164221159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-24162221262ATERF1
3gcc_A1e-24162221262ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256215.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A161XD490.0A0A161XD49_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-33redox responsive transcription factor 1