PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021988
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 226aa    MW: 25278.4 Da    PI: 8.6151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021988genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-18550147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell ++v ++G ++W+ I + ++ gR++k+c++rw + 
      DCAR_021988  5 KGPWSAEEDELLTKLVDEHGARNWTVIGNSIP-GRSGKSCRLRWCNQ 50
                     79******************************.***********985 PP

2Myb_DNA-binding58.21.9e-1859101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd+++ +a++q+G++ W+tIar ++ gRt++ +k++w++ 
      DCAR_021988  59 AFTAEEDDIIFKAHAQYGNK-WATIARLLN-GRTDNAVKNHWNST 101
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.785155IPR017930Myb domain
SuperFamilySSF466899.73E-31298IPR009057Homeodomain-like
SMARTSM007171.0E-15453IPR001005SANT/Myb domain
PfamPF002491.6E-17550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-25658IPR009057Homeodomain-like
CDDcd001671.55E-13749No hitNo description
SMARTSM007173.8E-1656104IPR001005SANT/Myb domain
PROSITE profilePS5129421.70856106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2359106IPR009057Homeodomain-like
CDDcd001671.59E-1159102No hitNo description
PfamPF002493.7E-1559101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDRTKGPWSA EEDELLTKLV DEHGARNWTV IGNSIPGRSG KSCRLRWCNQ LSPEVKHRAF  60
TAEEDDIIFK AHAQYGNKWA TIARLLNGRT DNAVKNHWNS TLKRKFVSSP GSEERSCRVM  120
KRSESVSDKN GSEISDSCNS EDWNAGKEKA FVMEPPTALT LSLPGTGTDY YDIKEKRGEK  180
NGEGVVRVSE DVVNVMKEMI KVEVRNYFEK EGGVRNAGVK RIGIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-4021064108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256234.11e-167PREDICTED: transcription factor MYB44-like
TrEMBLA0A164VPF61e-165A0A164VPF6_DAUCS; Uncharacterized protein
STRINGXP_008373085.11e-71(Malus domestica)
STRINGLus100141035e-72(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.17e-63myb domain protein 70