PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021988 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 25278.4 Da PI: 8.6151 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v ++G ++W+ I + ++ gR++k+c++rw + DCAR_021988 5 KGPWSAEEDELLTKLVDEHGARNWTVIGNSIP-GRSGKSCRLRWCNQ 50 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.9e-18 | 59 | 101 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+++ +a++q+G++ W+tIar ++ gRt++ +k++w++ DCAR_021988 59 AFTAEEDDIIFKAHAQYGNK-WATIARLLN-GRTDNAVKNHWNST 101 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.785 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-31 | 2 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 4 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-25 | 6 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-13 | 7 | 49 | No hit | No description |
SMART | SM00717 | 3.8E-16 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.708 | 56 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-11 | 59 | 102 | No hit | No description |
Pfam | PF00249 | 3.7E-15 | 59 | 101 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDRTKGPWSA EEDELLTKLV DEHGARNWTV IGNSIPGRSG KSCRLRWCNQ LSPEVKHRAF 60 TAEEDDIIFK AHAQYGNKWA TIARLLNGRT DNAVKNHWNS TLKRKFVSSP GSEERSCRVM 120 KRSESVSDKN GSEISDSCNS EDWNAGKEKA FVMEPPTALT LSLPGTGTDY YDIKEKRGEK 180 NGEGVVRVSE DVVNVMKEMI KVEVRNYFEK EGGVRNAGVK RIGIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-40 | 2 | 106 | 4 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256234.1 | 1e-167 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A164VPF6 | 1e-165 | A0A164VPF6_DAUCS; Uncharacterized protein | ||||
STRING | XP_008373085.1 | 1e-71 | (Malus domestica) | ||||
STRING | Lus10014103 | 5e-72 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 7e-63 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021988 |