PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021755
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 235aa    MW: 26893.4 Da    PI: 6.0352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021755genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l++ +   G  +W+t ++  g+ R++k+c++rw +yl
      DCAR_021755 14 RGPWSSEEDRKLINFILNNGIICWRTMPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.11.7e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E+ ++++++++lG++ W++Ia++++ gRt++++k++w++
      DCAR_021755  67 RGMFTETEENQIIQLHALLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      789*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129412.462961IPR017930Myb domain
SuperFamilySSF466897.75E-2711108IPR009057Homeodomain-like
SMARTSM007177.6E-101363IPR001005SANT/Myb domain
PfamPF002498.6E-111461IPR001005SANT/Myb domain
CDDcd001673.58E-71661No hitNo description
PROSITE profilePS5129426.79462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1667110IPR001005SANT/Myb domain
CDDcd001675.57E-1270110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWSSE EDRKLINFIL NNGIICWRTM PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGMF TETEENQIIQ LHALLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRVKTIQ  120
DEEKTQVNTE STVLKDQEQA SETTLTDKNV QSFNAANEYL NLLDVELWLN QETIDTSGSY  180
STSFSLEDSV NPSMGESLHI QEDSVQQWVD SADSMLSWDA FCSSIFPTHI LPIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255691.11e-175PREDICTED: myb-related protein 315-like
SwissprotP813946e-71MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A161ZVG01e-174A0A161ZVG0_DAUCS; Uncharacterized protein
STRINGVIT_14s0219g00050.t015e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-71myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]