PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021695
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 211aa    MW: 24232 Da    PI: 7.2959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021695genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
      DCAR_021695 19 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 66
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1772115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
      DCAR_021695  72 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 115
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-231269IPR009057Homeodomain-like
PROSITE profilePS5129415.9191466IPR017930Myb domain
SuperFamilySSF466892.77E-3017113IPR009057Homeodomain-like
SMARTSM007178.1E-131868IPR001005SANT/Myb domain
PfamPF002491.5E-161966IPR001005SANT/Myb domain
CDDcd001672.23E-102166No hitNo description
PROSITE profilePS5129424.83167121IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2570122IPR009057Homeodomain-like
SMARTSM007173.4E-1571119IPR001005SANT/Myb domain
PfamPF002493.3E-1672115IPR001005SANT/Myb domain
CDDcd001674.05E-1276115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDRKAQQQQQ QQLDVEVRKG PWTMEEDLIL INYIANHGEG VWNSLAKSAG LKRTGKSCRL  60
RWLNYLRPDV RRGNITPEEQ LLIMELHAKW GNRWSKIAKH LPGRTDNEIK NFWRTRIQKH  120
MKQADQQNFS TGQSSNSEHI MWTNDNQASS SHLASGAPQD HAMENYSPPS YPVNMDTGAA  180
LPPPSFPADQ SNENMWNVED FWSIHLLNND *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-27212110128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258853.11e-157PREDICTED: myb-related protein 305-like
SwissprotP813911e-95MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A161ZVK21e-156A0A161ZVK2_DAUCS; Uncharacterized protein
STRINGXP_008341440.11e-96(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-92myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]