PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021580
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 366aa    MW: 41431.2 Da    PI: 5.1617
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021580genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
      DCAR_021580 14 KGLWSPEEDEKLFNHIARFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding49.31.1e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++l++ ++++lG++ W+ Ia+ ++ gRt++++k++w++
      DCAR_021580  67 RGMFSQEEEDLILSLHQLLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.513961IPR017930Myb domain
SuperFamilySSF466892.96E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
CDDcd001676.45E-111761No hitNo description
PROSITE profilePS5129424.95662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2665116IPR009057Homeodomain-like
SMARTSM007174.1E-1466114IPR001005SANT/Myb domain
PfamPF002499.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.67E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGRHPCCVKP KLRKGLWSPE EDEKLFNHIA RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDLILS LHQLLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPSTHKPLS ESENKITNEK NYRDEASMMQ SSQAHHIEFA TTETEKPFTV DRGCRDSSDN  180
DTLAKSLAES LHSKPNYDPV FLLEFQERIN PEGYNSNLMG HFQQYQPSYD HDQFEAKPNF  240
GFSSMPELTN YDIQGIAEAE FSANSASTLT SLLFSEVKEC SSNSSIGTST ANAGFEMDKM  300
VGNHTTFPWD AANSLESLFQ FSGIKTEESM EASQWQGQPQ CSDDYISYQL TSLSEDINAE  360
IFHQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-30711620128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255557.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A164VYX50.0A0A164VYX5_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g09080.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-79myb domain protein 86