PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32975.7 Da PI: 8.201 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g + AeIrdp + + r +lg+fgt+eeAa+ ++ + +l+g DCAR_021563 94 KKYRGVRYRA-WGTFGAEIRDPMK---KERRWLGTFGTPEEAARVYDSVAISLRG 144 59*****999.**********843...5999*********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.12E-27 | 94 | 151 | No hit | No description |
Pfam | PF00847 | 3.2E-8 | 95 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.033 | 95 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-17 | 95 | 152 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-25 | 95 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-27 | 95 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MNLTRKLTSP LLGHKRRRCL RKIVRITVTD HDATDSSSDE EAELYNRRRV KKYLNVIRVE 60 AGVASPRKRE VSDNGNAGRQ TKLASRPVNE SSEKKYRGVR YRAWGTFGAE IRDPMKKERR 120 WLGTFGTPEE AARVYDSVAI SLRGTKATTN FGNPSWGVKQ QIVVQSDSSN EFAEGSHQNT 180 LTSPTSILRN ENRPAPEEVK DKRKGKDKVF DPMNICMPMD NPFRDDDGFG SMEPISFADA 240 PIFHGIFLEN DELSGADMGF SYDIMYGIGT TGSTSRVTDD YHFEDSDFSP ATD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 95 | 151 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256578.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A161ZTC6 | 0.0 | A0A161ZTC6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-37 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021563 |