PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021522
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 377aa    MW: 41233.8 Da    PI: 9.8232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021522genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v++ G+g+W+++++  g+ R+ k+c++rw +yl
      DCAR_021522 14 KGPWTPEEDIVLVSYVQENGPGNWRAVPANTGLARCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.54.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +Ed  +v++ ++lG++ W++Ia++++  Rt++++k++w++yl
      DCAR_021522  67 RGNFTDQEDRMIVHLQRLLGNR-WSAIASYLP-QRTDNDIKNYWNTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.573961IPR017930Myb domain
SuperFamilySSF466893.52E-3012108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002494.0E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-231568IPR009057Homeodomain-like
CDDcd001672.53E-101661No hitNo description
PROSITE profilePS5129425.53662116IPR017930Myb domain
SMARTSM007171.0E-1566114IPR001005SANT/Myb domain
PfamPF002491.3E-1467112IPR001005SANT/Myb domain
CDDcd001671.05E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2469116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRLPNNEKN EVKKGPWTPE EDIVLVSYVQ ENGPGNWRAV PANTGLARCS KSCRLRWTNY  60
LRPGIKRGNF TDQEDRMIVH LQRLLGNRWS AIASYLPQRT DNDIKNYWNT YLKKKLLRKQ  120
ARGAGDDQNV ARGANSEASS SSSKGQWEKR LQTNVHMAKQ ALSEALSLDK SPSASTVTAA  180
SPALSAQATT STGAPREQSP ASPYAASADN IAHLLKGWMK KPAASSSSSQ GHGTISSEIT  240
TTHDYSNSVK YNNHFYQAGS SSAAGYSPPS DGQTPECGIT GGHRGLDSFF NKFNSSKNYA  300
FPANAPLDGL ANLRAEGNAN NGLFMFPDRN YGKLNVHHQQ QLQPMPPMSL IDNWLFDDVT  360
AAANQAEQHN LMRNMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271111624128MYB TRANSFORMING PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257423.10.0PREDICTED: myb-related protein 306-like
TrEMBLA0A161XEE50.0A0A161XEE5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.18e-86myb domain protein 30