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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
DCAR_021496 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 295aa MW: 32894.9 Da PI: 8.5548 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| DCAR_021496 | genome | ARS-USDA | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 305.6 | 1.7e-93 | 1 | 294 | 29 | 301 |
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgtksidslqqlse.pqle 120
m+++aerda+irern+al e+k a+aerdma lqrd+al+er+ a+ erd+++++l ++ s++ s++ ++ +v +gtksi++ qq++ +++
DCAR_021496 1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALQERDSAMRERDEAMATLRYKGGSSVnenntSSDFPNNGVGRGTKSIQEDQQMHImYDMS 98
899******************************************************99887776766556666788999999999988855444444 PP
GAGA_bind 121 dsavelreeeklealpieeaaeeakekkkkkkrqrakk.pkek.kakkkkkksekskkkvkkesader.................skaekksidlvln 199
++ + ++++++i++ ++e+ + +k+k+++++k+ pk++ k++++ +k++++ kk+ ++s s+ + l ln
DCAR_021496 99 SGKYS-PGDIMTDSYQINDVPTEHVKPRKVKQTEENKEfPKKPaKSRRVSRKGAENLKKEGSAS---AsnickieqdlgadenqgSQIAGWKDSLELN 192
44444.5555667777777777777666666544444313332122333333333333333333...12357788888888888855544445799** PP
GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
+v++D+s++P+PvCsCtG+++ CYkWGnGGWqSaCCttt+S+yPLP+++++r +R++grKmS+gaf+klL +L +eGydls p+DLkdhWAkHGtn++
DCAR_021496 193 QVNFDDSAMPIPVCSCTGVPQPCYKWGNGGWQSACCTTTMSMYPLPQVSNKRYSRVGGRKMSGGAFSKLLTRLHDEGYDLSSPLDLKDHWAKHGTNRY 290
************************************************************************************************** PP
GAGA_bind 298 vtir 301
t++
DCAR_021496 291 STVK 294
**97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 295 aa
Download sequence Send
to blast |
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALQ ERDSAMRERD EAMATLRYKG 60
GSSVNENNTS SDFPNNGVGR GTKSIQEDQQ MHIMYDMSSG KYSPGDIMTD SYQINDVPTE 120
HVKPRKVKQT EENKEFPKKP AKSRRVSRKG AENLKKEGSA SASNICKIEQ DLGADENQGS 180
QIAGWKDSLE LNQVNFDDSA MPIPVCSCTG VPQPCYKWGN GGWQSACCTT TMSMYPLPQV 240
SNKRYSRVGG RKMSGGAFSK LLTRLHDEGY DLSSPLDLKD HWAKHGTNRY STVK*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
