PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21938 Da PI: 8.9436 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++Cvl+ ++ p++q++++ +v+k+FG++ ++++++a+p+ +r+++++sl++eA r+ +Pv+Gavg++++++++ +q+++e DCAR_021467 2 SCNGCRVLRKGCSESCVLRHCLqwiesPEAQAHATSFVAKFFGRAGLMSFISAVPQAQRPAIFQSLLFEAAGRTINPVNGAVGLLWTGKWHECQAAVE 99 6*********************************************************************************************9998 PP DUF260 94 la 95 + DCAR_021467 100 TI 101 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.145 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-25 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCVLR HCLQWIESPE AQAHATSFVA KFFGRAGLMS FISAVPQAQR 60 PAIFQSLLFE AAGRTINPVN GAVGLLWTGK WHECQAAVET ILRGGTLRPV SEFPSAGLNG 120 VVSDLSNMFK HGNEVSSSRS KRRRLCESSK LSQVVDLDLS LTRGYEVSDK RRLDTVSRNS 180 EESVTTTWFG AGEPKLLNLF * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 144 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255501.1 | 1e-146 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A164W1S7 | 1e-145 | A0A164W1S7_DAUCS; Uncharacterized protein | ||||
STRING | XP_009801229.1 | 2e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 9e-74 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021467 |