PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021266

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 293aa MW: 32554.8 Da PI: 9.8286

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021266	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104	2e-32	64	206	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+P+d+el+ e+L++kv+++ ++ e +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + + DCAR_021266 64 LPAGVKFDPSDQELL-EHLEAKVRSDArklhplID--EfipTLEGEnGICYAHPEKLP-GVSKDGFIRHFFHRPSKAYTTGTRKRRKVHadidgnETR 157 799**********.99**99956643322..22222333336******.554555577**************844455455889 PP NAM 83 Wkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v+ ++ +g kk+Lv+y g+++k+ekt+Wvmh+y+l DCAR_021266 158 WHKTGKTRAVFIDqGKVIKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206 ******998345558*****6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.49E-37	59	225	IPR003441	NAC domain
PROSITE profile	PS51005	32.812	64	225	IPR003441	NAC domain
Pfam	PF02365	1.8E-15	65	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTWCTDCSDD AMAIVRKSSP PPPATVLTVA SNESPTHNRV KACPSCGHQI KWQEKGGIHN 60 LPGLPAGVKF DPSDQELLEH LEAKVRSDAR KLHPLIDEFI PTLEGENGIC YAHPEKLPGV 120 SKDGFIRHFF HRPSKAYTTG TRKRRKVHAD IDGNETRWHK TGKTRAVFID QGKVIKGYKK 180 ILVLYTNYGK QRKPEKTNWV MHQYHLGNND DEKDGELVVS KIFFQTQPRQ CSSSSTTSAV 240 NLRRSAPILP KDTVAVNTNT PGNAGGSSLK NNSAVFVDYY NQSLISFKQT TS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256991.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_017256992.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A161YER8	0.0	A0A161YER8_DAUCS; Uncharacterized protein
STRING	Gorai.008G155200.1	1e-135	(Gossypium raimondii)
STRING	cassava4.1_032739m	1e-135	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-121	NAC domain containing protein 73

Link Out ? help Back to Top
Phytozome	DCAR_021266

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]