PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021265
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 1697aa    MW: 190009 Da    PI: 4.865
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021265genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.3e-172074357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 kR   t+ qle Le+ ++ ++yps++ r++L+ klgL++rq ++WF+ rR k++k
  DCAR_021265 20 KRKMKTAAQLELLENTYALEQYPSEALRADLSVKLGLSDRQLQMWFCHRRLKDRK 74
                 89999************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-16274IPR009057Homeodomain-like
SuperFamilySSF466892.57E-141474IPR009057Homeodomain-like
PROSITE profilePS5007115.8071575IPR001356Homeobox domain
SMARTSM003891.2E-151779IPR001356Homeobox domain
CDDcd000861.66E-121875No hitNo description
PfamPF000462.1E-142074IPR001356Homeobox domain
SMARTSM005713.4E-16508567IPR018501DDT domain
PROSITE profilePS5082714.344508567IPR018501DDT domain
PfamPF027911.5E-15510564IPR018501DDT domain
PfamPF050668.2E-14690757IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.3E-9882926IPR028942WHIM1 domain
PfamPF156133.1E-1110621132IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1697 aa     Download sequence    Send to blast
MEEEGKQDME KTPEGEGKVK RKMKTAAQLE LLENTYALEQ YPSEALRADL SVKLGLSDRQ  60
LQMWFCHRRL KDRKPTPPKR PRKDSSPAAG LGSSGGVGIG DEIRALGSFS HIDLQKRMIV  120
PNLGVDVPDM KRFYQPPQAL SELRAIEFIE AQLGEPLRKD GPILGLEFDP LPPGAFGTPI  180
ALTSGQQKSV GGHYEVKLYE RLNAKPIQAS ARALHEYQFL PEKPCVKSDA YERPVSLYNH  240
NSPAHLPSSR TSSSNVRLVA HGNEQLPSAY GFQVPFPNLS LLPQQGRQGH LLASTSTDHD  300
TRAFSQSFPI IVEDAHPVSH PISGFDSSLI PSERQVILDD DILRIEKKRK FDEARIAREA  360
EANEKRIRKE LEKQDILMRK REEQMRKEME RQDRERRKEE ERLLREKQRE EERLQREQRR  420
EMERREKFLL KESMRAEKLR IKEEMRREKE AAKLKLANER ATARKIAKES MELIDDERVE  480
LMDIAASRKG LPSIMSLDSD ALQNLELFRD VSSNLQVWRF LVTFADVLGI WPFTIDEFVQ  540
AFHDHDSRLL AEIHVALLKS IIKDIEDVAR SPSFGLGANQ NSAANPEGGH PQIVEGAYAW  600
GFDIRSWQRH LNPLTWPEIL RQFALSAGFG PKLRKRSAEQ TYFRDENEGN GSEDVILTLR  660
DGSAAKKAFA IMHERGYSNP RRSRHRLTPG TVKYAAFHVL SLEGGRGLTI LDVADRIQTS  720
GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRAPY RKDPADAEAL LSAAREKILV  780
YKNGILDGDV EDVDKEEAER DADSESDVAE ELEVEDIGSN LKPSKDVSSC EPTDSQLETK  840
SASGKEILQE VLEPSEHHLE NVVMTSLEAV PNKEDTEIDE SQSVEPWVQG LVDGEYSDLS  900
VEERLNALVA LIGVANEGNS IRIILEDRME AANALKKQMW ADAQTDKRRM KEDCVMRIPY  960
SSIICSKGEE NISTAVVAGK QSSRNDGKSD ISSIQSEVMH EHLGDLYVNT NSMHAERCSS  1020
MQELPVATDS SPLVQAVYAA EKSRSRLKSI ILQKADEMYV HRSLPLGQDR RRNCYWQFVT  1080
SASLNDPGNG RIFVQMCNDS WKLIDSEEDF DALLASLDVR GVRESHLFSM LQLIEMSFKE  1140
TVRKNLSRVS SEKNDESVET MAPEMNSDDQ PCAADSPSSR ICLSNPDMPE SSVSFKIGLG  1200
SNETEVKDAL QRHQEFEKWM WKECFNPSIL RAMRYGKPRG KPVYSVCDFC RSLYEESCPC  1260
QYTSNVSTGD SSFSEYVNCR EKLCSDAGIT APSVRISLLI AQLASIEVSI PVEALQSVWS  1320
DDSRKSWGMK LQTATSAEEL LQILTLLEGC IKRDFLLSDY ETTSELLVSS DSTGPKTHGT  1380
STPEVVPVLP WLPQTTSSVA LRLMELDSSI SYMLSQKEDS QKEEGYSDLA APSSIDVVKE  1440
YISEGEAPEA SQDAGSLHQE ACVKTSGHRS SGRRRGRGRG QGHSYGGRSQ KRVGLEAGQK  1500
NTSNADGFKQ LRGWKSGKTR GRGGRKRGQW SVGNRSAKNK QKATKKSTGV SGDSGETGDI  1560
SVDRTPANSV LKWNIEPPPA YSPEESSTSD SQSEDNVENG LASAEYDDIM VDNYPNMYNS  1620
RQLEYDVNGD EDYDDRAEAE EDGNDDDMDD FVEDEQEDVE RYFNGYSDED GSMEDMDKKQ  1680
TGNTDDITES ASEDGD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257814.10.0PREDICTED: homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A161ZWH50.0A0A161ZWH5_DAUCS; Uncharacterized protein
STRINGXP_002517852.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator