PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HB-other | ||||||||
Protein Properties | Length: 1697aa MW: 190009 Da PI: 4.865 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.4 | 9.3e-17 | 20 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle Le+ ++ ++yps++ r++L+ klgL++rq ++WF+ rR k++k DCAR_021265 20 KRKMKTAAQLELLENTYALEQYPSEALRADLSVKLGLSDRQLQMWFCHRRLKDRK 74 89999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 2 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-14 | 14 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.807 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 17 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-12 | 18 | 75 | No hit | No description |
Pfam | PF00046 | 2.1E-14 | 20 | 74 | IPR001356 | Homeobox domain |
SMART | SM00571 | 3.4E-16 | 508 | 567 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 14.344 | 508 | 567 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.5E-15 | 510 | 564 | IPR018501 | DDT domain |
Pfam | PF05066 | 8.2E-14 | 690 | 757 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.3E-9 | 882 | 926 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.1E-11 | 1062 | 1132 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1697 aa Download sequence Send to blast |
MEEEGKQDME KTPEGEGKVK RKMKTAAQLE LLENTYALEQ YPSEALRADL SVKLGLSDRQ 60 LQMWFCHRRL KDRKPTPPKR PRKDSSPAAG LGSSGGVGIG DEIRALGSFS HIDLQKRMIV 120 PNLGVDVPDM KRFYQPPQAL SELRAIEFIE AQLGEPLRKD GPILGLEFDP LPPGAFGTPI 180 ALTSGQQKSV GGHYEVKLYE RLNAKPIQAS ARALHEYQFL PEKPCVKSDA YERPVSLYNH 240 NSPAHLPSSR TSSSNVRLVA HGNEQLPSAY GFQVPFPNLS LLPQQGRQGH LLASTSTDHD 300 TRAFSQSFPI IVEDAHPVSH PISGFDSSLI PSERQVILDD DILRIEKKRK FDEARIAREA 360 EANEKRIRKE LEKQDILMRK REEQMRKEME RQDRERRKEE ERLLREKQRE EERLQREQRR 420 EMERREKFLL KESMRAEKLR IKEEMRREKE AAKLKLANER ATARKIAKES MELIDDERVE 480 LMDIAASRKG LPSIMSLDSD ALQNLELFRD VSSNLQVWRF LVTFADVLGI WPFTIDEFVQ 540 AFHDHDSRLL AEIHVALLKS IIKDIEDVAR SPSFGLGANQ NSAANPEGGH PQIVEGAYAW 600 GFDIRSWQRH LNPLTWPEIL RQFALSAGFG PKLRKRSAEQ TYFRDENEGN GSEDVILTLR 660 DGSAAKKAFA IMHERGYSNP RRSRHRLTPG TVKYAAFHVL SLEGGRGLTI LDVADRIQTS 720 GLRDLTTSKT PEASIAAALS RDTKLFERTA PSTYCVRAPY RKDPADAEAL LSAAREKILV 780 YKNGILDGDV EDVDKEEAER DADSESDVAE ELEVEDIGSN LKPSKDVSSC EPTDSQLETK 840 SASGKEILQE VLEPSEHHLE NVVMTSLEAV PNKEDTEIDE SQSVEPWVQG LVDGEYSDLS 900 VEERLNALVA LIGVANEGNS IRIILEDRME AANALKKQMW ADAQTDKRRM KEDCVMRIPY 960 SSIICSKGEE NISTAVVAGK QSSRNDGKSD ISSIQSEVMH EHLGDLYVNT NSMHAERCSS 1020 MQELPVATDS SPLVQAVYAA EKSRSRLKSI ILQKADEMYV HRSLPLGQDR RRNCYWQFVT 1080 SASLNDPGNG RIFVQMCNDS WKLIDSEEDF DALLASLDVR GVRESHLFSM LQLIEMSFKE 1140 TVRKNLSRVS SEKNDESVET MAPEMNSDDQ PCAADSPSSR ICLSNPDMPE SSVSFKIGLG 1200 SNETEVKDAL QRHQEFEKWM WKECFNPSIL RAMRYGKPRG KPVYSVCDFC RSLYEESCPC 1260 QYTSNVSTGD SSFSEYVNCR EKLCSDAGIT APSVRISLLI AQLASIEVSI PVEALQSVWS 1320 DDSRKSWGMK LQTATSAEEL LQILTLLEGC IKRDFLLSDY ETTSELLVSS DSTGPKTHGT 1380 STPEVVPVLP WLPQTTSSVA LRLMELDSSI SYMLSQKEDS QKEEGYSDLA APSSIDVVKE 1440 YISEGEAPEA SQDAGSLHQE ACVKTSGHRS SGRRRGRGRG QGHSYGGRSQ KRVGLEAGQK 1500 NTSNADGFKQ LRGWKSGKTR GRGGRKRGQW SVGNRSAKNK QKATKKSTGV SGDSGETGDI 1560 SVDRTPANSV LKWNIEPPPA YSPEESSTSD SQSEDNVENG LASAEYDDIM VDNYPNMYNS 1620 RQLEYDVNGD EDYDDRAEAE EDGNDDDMDD FVEDEQEDVE RYFNGYSDED GSMEDMDKKQ 1680 TGNTDDITES ASEDGD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257814.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A161ZWH5 | 0.0 | A0A161ZWH5_DAUCS; Uncharacterized protein | ||||
STRING | XP_002517852.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021265 |