PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35286.2 Da PI: 5.1756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.8e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l +++++G +W+ ++ g+ R++k+c++rw +yl DCAR_021213 14 KGEWSKEEDDKLRAYINKYGIWNWRQLPQFAGLSRCGKSCRLRWKNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.5e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+el+ ++++qlG++ W+ Ia +++ gRt++++k++w+++l DCAR_021213 67 RGNYTKDEEELIFNLHNQLGKK-WSVIATKLP-GRTDNEIKNFWHTHL 112 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.907 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.81E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.12E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.298 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.78E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MVRSPSIDKN GIRKGEWSKE EDDKLRAYIN KYGIWNWRQL PQFAGLSRCG KSCRLRWKNY 60 LQPNVKRGNY TKDEEELIFN LHNQLGKKWS VIATKLPGRT DNEIKNFWHT HLKKRTEGLN 120 STLPSNEKKK KSRRQTSQIS KQEIDEISFE SDKGREIKSP TLSEGLTGSP NESCCTELSQ 180 SYSDAPLTDL FSWVQKNGAR AKSCETSDGL LSQELNIEDY ESEEGSASNE MPFRCSDVSD 240 LMAWFGEDNS VTPSIEGLGD IWSQSFETDI YMINAHEQGL SDPGLVHPSS PATEEFFLWS 300 YDLSDVCIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 130 | KKRTEGLNSTLPSNEKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257243.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A161ZU33 | 0.0 | A0A161ZU33_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0019s14130.1 | 8e-63 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 1e-52 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021213 |