PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_021184

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 302aa MW: 33265.5 Da PI: 6.4513

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021184	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ Fs++ L H++ H DCAR_021184 120 FSCRYCSRKFSTSQALGGHQNAH 142 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.9E-4	109	144	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.83E-5	117	144	No hit	No description
PROSITE profile	PS50157	10.699	120	147	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	122	142	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEPISPEPCP SEASSISATS HQPATSPDKM VMKMKEIDEN PPQELNLLEP SESSYLQLNL 60 EAQNNINDVN DMLQNNTSST LELNLFSPPN QLPLSSLAPS ESSNEKKPDH STTSSSSRSF 120 SCRYCSRKFS TSQALGGHQN AHKQVRKDEK RGQSGSYHDI EPYNLHPSFH HLNYYHPYST 180 YSHHLPLYGS SVNSFLHRPN LRWSSPSSPY RFGNHNPTWS GPGPYEHHRL RLESLQPQNY 240 ASSSSAPPVS LFDMQSTGVR DLLGGVSSSP MKNLESDIGK VASGDDGQGE NASGLDLNLK 300 L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256647.1	0.0	PREDICTED: zinc finger protein 3-like
TrEMBL	A0A164W924	0.0	A0A164W924_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Link Out ? help Back to Top
Phytozome	DCAR_021184