PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_021135 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 87aa MW: 9980.45 Da PI: 11.52 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.9 | 1.4e-09 | 24 | 53 | 1 | 34 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslg 34 ++y+GVr+++ +gr++AeI+d ++ + r++lg DCAR_021135 24 PRYRGVRRRP-WGRFAAEIHDpWK----KIRVWLG 53 68********.**********883....5999998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.3E-5 | 24 | 53 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0027 | 25 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.905 | 25 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-12 | 25 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-9 | 25 | 68 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-5 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-5 | 48 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF01578 | 4.2E-7 | 52 | 75 | IPR002541 | Cytochrome c assembly protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0017004 | Biological Process | cytochrome complex assembly | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0020037 | Molecular Function | heme binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 87 aa Download sequence Send to blast |
MRRNNRSKPA TETPIAAAAA GNEPRYRGVR RRPWGRFAAE IHDPWKKIRV WLGILSGAVW 60 ANEAWGSYWN WYPKIITYKL VNSGLQ* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ915915 | 5e-79 | KJ915915.1 Daucus carota ethylene responsive element binding factor (ERF-B1-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254645.1 | 9e-32 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_017254646.1 | 9e-32 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_017254647.1 | 9e-32 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_017254648.1 | 9e-32 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 9e-16 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A161ZWR9 | 6e-55 | A0A161ZWR9_DAUCS; Uncharacterized protein | ||||
STRING | Bra035792.1-P | 1e-14 | (Brassica rapa) | ||||
STRING | A0A087H1B6 | 6e-15 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50640.1 | 4e-07 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_021135 |
Publications ? help Back to Top | |||
---|---|---|---|
|