PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_021107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 544aa MW: 61399.7 Da PI: 6.7526 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.3 | 3.9e-139 | 174 | 543 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++L++cA+avs++dl aq+l+a+l+ ++s +g+p+qRl ay++e+L arla+s+s +yk+l+++e + sse l+++++++ev+P+lkf+++ aN DCAR_021107 174 KQVLVACARAVSDNDLLTAQWLMAELRLMVSVSGEPIQRLGAYLLEGLVARLASSGSLIYKSLRCTEPE---SSELLSYMHVLYEVCPYLKFGYMSAN 268 799*****************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aI ea++ e+ vHiiDf+i+qG QW++L+qa+a+R++gpp++RiTg+++++s + l+ +g+rL+++A++++vpfef++ ++ + +++++e+L+ DCAR_021107 269 GAIAEAMKDENSVHIIDFQIGQGSQWITLIQAFAARRGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSRLARSFKVPFEFHA-AVMSGSEVQPESLE 365 **************************************************998899999************************.8999********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++ gEalaVn++++lh+++desvs++++rd +L++vk+l+Pkvv++veqe+++n++ F+ rfle+++yysa+f+s+ea+lpre++eri+vE+++l+r+ DCAR_021107 366 IHYGEALAVNFAFMLHHMPDESVSTQNHRDGLLRFVKRLNPKVVTLVEQESNTNTAAFFPRFLETMDYYSAMFESIEATLPREHKERINVEQHCLARD 463 ************************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vn++aceg+er+erhe ++kW++r+++aGF+p+pls+ +++++k+ll ++ + yr+ee++g+l+lgW++r Lv+ +aW+ DCAR_021107 464 VVNIIACEGTERVERHELMGKWKSRFKMAGFTPYPLSSLVNATIKRLLDNYCD-KYRLEEREGALYLGWMNRDLVASCAWK 543 ***************************************************95.5*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.082 | 147 | 524 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-136 | 174 | 543 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MLVSSMQASR RRRSSLSNTL YYPSTQGVEH CLFPKSQSLD KQLHYSNSIP GIKTERYCTL 60 ESSLATDNFG SLHNSTTAVT YSQSESSMSQ QESQSYLHDH NYGSPMSVSC LTDDTTELRQ 120 KANTNDFKHK LKELETLMLG PDSNFLDSLN CNLASPETDN WKRMFEEIPR RDMKQVLVAC 180 ARAVSDNDLL TAQWLMAELR LMVSVSGEPI QRLGAYLLEG LVARLASSGS LIYKSLRCTE 240 PESSELLSYM HVLYEVCPYL KFGYMSANGA IAEAMKDENS VHIIDFQIGQ GSQWITLIQA 300 FAARRGGPPH IRITGIDDST SAYARGGGLN IVGKRLSRLA RSFKVPFEFH AAVMSGSEVQ 360 PESLEIHYGE ALAVNFAFML HHMPDESVST QNHRDGLLRF VKRLNPKVVT LVEQESNTNT 420 AAFFPRFLET MDYYSAMFES IEATLPREHK ERINVEQHCL ARDVVNIIAC EGTERVERHE 480 LMGKWKSRFK MAGFTPYPLS SLVNATIKRL LDNYCDKYRL EEREGALYLG WMNRDLVASC 540 AWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 180 | 542 | 26 | 378 | Protein SCARECROW |
5b3h_A | 1e-58 | 180 | 542 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-58 | 180 | 542 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017214888.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017214890.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017214891.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Refseq | XP_017214892.1 | 0.0 | PREDICTED: scarecrow-like transcription factor PAT1 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A164WAS6 | 0.0 | A0A164WAS6_DAUCS; Uncharacterized protein | ||||
STRING | VIT_12s0057g00560.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_021107 |
Publications ? help Back to Top | |||
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