PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021082
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 393aa    MW: 43244.9 Da    PI: 5.0827
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021082genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.3e-053377442
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                   C++++ ++    C + +  lC++C    H+g      H+++p+
  DCAR_021082 33 LLCERCNLQPSFVRCVEESLSLCQNCDWMAHSGsnsgsvHKTQPV 77
                 57*******9******************99*889999***99886 PP
2CCT58.32.7e-20335378144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYk+K+ktRkFeK++rY++RKa+A+ R+RvKGrFvk+ 
  DCAR_021082 335 RSSAVQRYKDKKKTRKFEKRVRYATRKARADVRKRVKGRFVKAG 378
                  889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000212.31E-4234No hitNo description
PROSITE profilePS501198.8453077IPR000315B-box-type zinc finger
CDDcd000215.68E-43477No hitNo description
PROSITE profilePS5101715.16335377IPR010402CCT domain
PfamPF062031.9E-15335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVYCRSDAAC LCLSCDRNVH SANALSRRHS RTLLCERCNL QPSFVRCVEE SLSLCQNCDW  60
MAHSGSNSGS VHKTQPVNCY SGCPSAAELS NIWSFLLDLP SVVDSTCEQG IGSMTINDKS  120
QADFGKPTNN HQDLCIDASD SKNVNSNLWK GSKMAEIDKK RAEGNQQTES AKLTPTTVGG  180
TKELDLCEDD DYYEDFNMDE LELNIEKYEE LFGVGHNDPQ HLFNDDGIDS LFNMKRTGDD  240
SNCQDAYAAE GSLIGLENIV QPTGSNAESA DSMISCKTEP IACFARQTSN LSFSGLTGDS  300
STGGEYQDRG ASPMLVMGEP PPWCTPESSL ASSSRSSAVQ RYKDKKKTRK FEKRVRYATR  360
KARADVRKRV KGRFVKAGDA FDYDPLSQTR SF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215113.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_017215114.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_017215115.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_017215116.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-121COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A161XFB50.0A0A161XFB5_DAUCS; Uncharacterized protein
STRINGEOX935731e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-88B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]