PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 183aa MW: 21447.6 Da PI: 9.9777 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 5.9e-18 | 18 | 74 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r k+ ++t+eq++ Le+ F+ n+ + +++ +LA++l+++ rq+ +W+qN+Ra++k+ DCAR_020998 18 RNKKKRLTQEQVRLLEASFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKN 74 567889*************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 104.7 | 7.3e-34 | 19 | 111 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl++eqv+lLE sF+ +++Lep+rK +la+eL++ prq+a+W+qn+RAR+k++ lE dy+aL+ +++a +++++Leke ++Lr el++ DCAR_020998 19 NKKKRLTQEQVRLLEASFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKNQSLELDYTALHMRLEAELTQKKQLEKEAQRLRIELQR 111 59**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 11 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.277 | 15 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.68E-18 | 17 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-16 | 17 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-12 | 18 | 76 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 18 | 74 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MMKNIFKNSE NRKHCTSRNK KKRLTQEQVR LLEASFNGNN RLEPDRKLQL AHELDIPPRQ 60 IAIWYQNKRA RWKNQSLELD YTALHMRLEA ELTQKKQLEK EAQRLRIELQ RLKTEISIKQ 120 QVQMFQPQPP LASVSSISSN CDELRSSSLR EEQVNCSWMH DQALRVEEFY ACLIGGNGSN 180 LI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251569.1 | 1e-84 | PREDICTED: homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A164WDK1 | 1e-131 | A0A164WDK1_DAUCS; Uncharacterized protein | ||||
STRING | VIT_10s0003g00380.t01 | 3e-48 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-35 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020998 |