PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020815
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family E2F/DP
Protein Properties Length: 452aa    MW: 49927.5 Da    PI: 8.8182
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020815genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-2785167271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+++ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  DCAR_020815  85 NGRGLRQFSMK---VCEKVQSkGRTTYNEVADELVAEfsdpgngisspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 167
                  789********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-4680173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-3584167IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2586167IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-2187168IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.90E-41172275IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.45E-42174299No hitNo description
SMARTSM011382.1E-67174334IPR014889Transcription factor DP, C-terminal
PfamPF087812.5E-40175299IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MISGSNREGA SKSWGTNGSG QSVSTSGSVG SPTTRSEAVV NTPPSDKTLI RLNHIDAHAD  60
DVASQATDIN KKKKRGQRAV GGDKNGRGLR QFSMKVCEKV QSKGRTTYNE VADELVAEFS  120
DPGNGISSPD QQQYDEKNIR RRVYDALNVL MAMDIISKDK KEIQWRGLPR TSMNDIEELK  180
CELLGLRSRV EKKAAYLQEL EEQYVGLQNL IQRNEQLYSS GDTPSGGVAL PFILVQTRPH  240
ATVEVEISED MQLVHFDFNS TPFELHDDNY VLKAMKVCER QQGNEPQIPS DGGESSSVPV  300
FQPQIAQPSS LGVQSSRPPT SPPLPGILKA ARTTVHDNNH TGTPFCIISF NVSKSKLGEC  360
WRTKPEDLLR VPPRWHAKVC KNRILATVTP EDKTLVRRIQ DIRMSTSSNV HESNLKLVRV  420
MYNRSLPIVM ANACGQGPAL VPDILRLKTM N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3978172193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257764.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-149DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A161ZXI00.0A0A161ZXI0_DAUCS; Uncharacterized protein
STRINGXP_010241817.11e-180(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-139Transcription factor DP