PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24847.7 Da PI: 5.218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8.2e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++l v++lG ++W++ a+ g+gR++k+c++rw +yl DCAR_020809 8 KGPWFEEEDQRLTAIVRLLGERRWDALANASGLGRSGKSCRLRWMNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 62 | 104 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr +++E++l++++++q+G++ W++Iar+++ gRt++++k++w++ DCAR_020809 62 GRISEDEEKLILQLHQQWGNK-WSRIARKLP-GRTDNEIKNYWRS 104 7889*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.392 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.43E-27 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-7 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 24.176 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 5.6E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-15 | 62 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.85E-10 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MQDQKMRKGP WFEEEDQRLT AIVRLLGERR WDALANASGL GRSGKSCRLR WMNYLRPNLK 60 HGRISEDEEK LILQLHQQWG NKWSRIARKL PGRTDNEIKN YWRSRLRREY QVQGQEEAEQ 120 QLTVSNCEGI AQSIGTRDCI LEKDEISESS FESSDTLQLL DYAIMRSPYE NRVSEWFAEW 180 SSDENIDGVK HNLDYCSADS CYCSSLLWNM D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-28 | 8 | 109 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-28 | 8 | 109 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-28 | 8 | 109 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-28 | 8 | 109 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 8 | 109 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256685.1 | 1e-155 | PREDICTED: myb-related protein MYBAS1 | ||||
TrEMBL | A0A164WIR1 | 1e-153 | A0A164WIR1_DAUCS; Uncharacterized protein | ||||
STRING | XP_009625011.1 | 6e-66 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 3e-58 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020809 |