PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020787 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 27833.1 Da PI: 7.3016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++++++ +++ +LA++l L+ rqV vWFqNrRa++k DCAR_020787 62 KKKRMTSEQLEYLESRFQEEMKLDPDRKIKLARELALQPRQVAVWFQNRRARWK 115 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.3 | 3.1e-36 | 61 | 152 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+r+++eq++ LE+ F+ee kL+p+rK +lareL lqprqvavWFqnrRAR+ktkqlE+ y +Lk+++d ++ e+++L++ev +Lr+ lk DCAR_020787 61 EKKKRMTSEQLEYLESRFQEEMKLDPDRKIKLARELALQPRQVAVWFQNRRARWKTKQLEHLYLSLKHQLDLVSMEKHKLQEEVVALRAILK 152 69**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-20 | 47 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.475 | 57 | 117 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-17 | 60 | 121 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.6E-17 | 62 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.70E-16 | 62 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 63 | 121 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEWNNGNNQI RPSFLSHQST SFNFLYNSHY PETETQAGAH GGMGDVMEDV NRVQQHGASH 60 EKKKRMTSEQ LEYLESRFQE EMKLDPDRKI KLARELALQP RQVAVWFQNR RARWKTKQLE 120 HLYLSLKHQL DLVSMEKHKL QEEVVALRAI LKQEVTRKQV WGGCNNPATT TDMTSAEDTV 180 ESTSVFPSSM HVKTTRVRSC TENNNMNVTA NYQGTYVFEA DEYNNSANWG AAGTAVMPCY 240 NP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017257298.1 | 0.0 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A164WJD2 | 0.0 | A0A164WJD2_DAUCS; Uncharacterized protein | ||||
STRING | XP_009758049.1 | 8e-56 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-45 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020787 |