PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020779

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 362aa MW: 39056.5 Da PI: 4.5806

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020779	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	334	357	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C+++F++ L++H + H DCAR_020779 334 HTCNSCKRTFKSEVALESHNKAkH 357 79*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.863	334	361	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.8E-5	334	357	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	336	357	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEFWAAEVKA GESFKVKIDE NKALHLSQAC IGDVEKDIPV SICLYVKVDE KKLALGTLNS 60 KKLFQQSFDL VFDKTFEISH NWKNGTSDVD DSDAESDEDI PVIAANGGPP TEVKQEHVKA 120 SADKNSAADK QKDKEKAKIV EPRKAASSDT TDDSSEDDET SSEDDPKVSV KKDSAAGKQK 180 ANIVEPTKDV SSDDTDDSSD DDETSSEDDT KVSAEKVSAA GKQKAKIVDP KNDADSGDDD 240 AMSEDYSEEA DESDEDSDSD EDEETPVQVK SSKKRALTPA KKALPEKKAK LITPPKTDGK 300 KSSVHVATPY PSKQTGKTPA NKLNQQTPKT DGSHTCNSCK RTFKSEVALE SHNKAKHTGG 360 K*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEFWAAEVKA GESFKVKIDE NKALHLSQAC IGDVEKDIPV SICLYVKVDE KKLALGTLNS  60
KKLFQQSFDL VFDKTFEISH NWKNGTSDVD DSDAESDEDI PVIAANGGPP TEVKQEHVKA  120
SADKNSAADK QKDKEKAKIV EPRKAASSDT TDDSSEDDET SSEDDPKVSV KKDSAAGKQK  180
ANIVEPTKDV SSDDTDDSSD DDETSSEDDT KVSAEKVSAA GKQKAKIVDP KNDADSGDDD  240
AMSEDYSEEA DESDEDSDSD EDEETPVQVK SSKKRALTPA KKALPEKKAK LITPPKTDGK  300
KSSVHVATPY PSKQTGKTPA NKLNQQTPKT DGSHTCNSCK RTFKSEVALE SHNKAKHTGG  360
K*

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By fertilization. {ECO:0000269\|PubMed:15082924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254581.1	0.0	PREDICTED: histone deacetylase HDT1-like isoform X1
Swissprot	Q6V9I6	1e-31	HDT1_SOLCH; Histone deacetylase HDT1
TrEMBL	A0A164WJL5	0.0	A0A164WJL5_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3176	18	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	5e-18	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	DCAR_020779

Publications ? help Back to Top
Lagacé M,Chantha SC,Major G,Matton DP Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules. Plant Mol. Biol., 2003. 53(6): p. 759-69 [PMID:15082924]