PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020759 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | AP2 | ||||||||
Protein Properties | Length: 414aa MW: 47398.5 Da PI: 5.1095 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.4 | 1.5e-07 | 54 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV+++k + r++A+++d s+ + k+k + ++ Aa a++ a++k++g DCAR_020759 54 SIYKGVTRHKFTRRFEAHLWDkDSWtTQhKKKGR-QRAYENEDLAAHAYDLAALKYWG 110 57*******************7777544544444.47788889*************98 PP | |||||||
2 | AP2 | 42.6 | 1.5e-13 | 153 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV ++ +g+W+A+I++ ++ +lg+f t++eAa a++ a+ +l+g DCAR_020759 153 SEYRGVAKHHAKGKWEARIKViG-----EkRYRYLGTFTTEKEAAIAYDLAAIQLRG 204 569******************43.....25**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-5 | 54 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-10 | 54 | 120 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15 | 55 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-10 | 55 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-7 | 55 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.61E-22 | 153 | 214 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-16 | 153 | 214 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-26 | 154 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.963 | 154 | 212 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-7 | 154 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-18 | 154 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-5 | 194 | 214 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MKEKPSNSLS SRANSKSSSI HSSTQRIPPL KNSFSKKKRD IVQNGNRAPI HRTSIYKGVT 60 RHKFTRRFEA HLWDKDSWTT QHKKKGRQRA YENEDLAAHA YDLAALKYWG PTTALNFPAS 120 LYEKEIEKMS NLTKEEYVAT LKRKSRGFSR GASEYRGVAK HHAKGKWEAR IKVIGEKRYR 180 YLGTFTTEKE AAIAYDLAAI QLRGTSAVTN FDISTYKQDL HEYDTLLETT DEERNDYEKK 240 YNDEQGEQIE EMTMLSRTTE GFNDMDLGKD VAMDFINVHD YEKFPKLNVS NDGYYEASGE 300 LVPLSKETSN NTENYMDGNY DGLVPAVVED AYDLDMFLDE NLYENYALNQ YGLVDDEFMQ 360 MTTMNPCCDL NQDISPVKEY RTGDDISDLV ENEAEDMKDG KGCTGDEANN SMK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256692.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor WRI1-like | ||||
Swissprot | Q38914 | 3e-65 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A164WJZ6 | 0.0 | A0A164WJZ6_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 5e-58 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020759 |