PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020732
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 338aa    MW: 37631.3 Da    PI: 6.6782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020732genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3114.64e-36771841100
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+k ltpsdv+k++rlv+pk++ae++        g++ e++  l++edesg++W+++++y+++s++yvltkGW++Fvk+++L++gD+vvF+++++++ 
  DCAR_020732  77 FEKPLTPSDVGKLNRLVIPKQHAEKYfplaanggGESVEKGLLLSFEDESGKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERSRNESD 174
                  99******************************9966667999**************************************************999999 PP

                  ..EEEEE-SS CS
           B3  91 elvvkvfrks 100
                  +++v+++r++
  DCAR_020732 175 RFFVGWRRRN 184
                  9******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-4273190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.09E-3275183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-3176182No hitNo description
PROSITE profilePS5086315.5877184IPR003340B3 DNA binding domain
SMARTSM010193.1E-2977184IPR003340B3 DNA binding domain
PfamPF023621.2E-3277184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSINQELPSD TLWWTQQQHH TPIMEQTPAN THFHQRQNTH TTPLSFNLNQ ETETEEMDRD  60
QEESVEQVVY VQKDSMFEKP LTPSDVGKLN RLVIPKQHAE KYFPLAANGG GESVEKGLLL  120
SFEDESGKTW RFRYSYWNSS QSYVLTKGWS RFVKEKRLDA GDVVVFERSR NESDRFFVGW  180
RRRNATPPQS ENTVAQSGSS GGAGWTRVYY SGYPYPTVVS NGQAVANYQP QCLHAPGLAV  240
LYIRYSSRIP GGGGLGGMQN QTTAGGGNSK TVRLFGVNLE CQSDEPPGVG ADGSNQSEDQ  300
AQTQVHHQHY NYSNGGGAAH VSKHHSSLHM VSHCSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48731834113B3 domain-containing transcription factor NGA1
5os9_B2e-48731834113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255225.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI36e-65Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A164WKJ80.0A0A164WKJ8_DAUCS; Uncharacterized protein
STRINGXP_009600245.16e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-67B3 family protein