PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020689
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family M-type_MADS
Protein Properties Length: 563aa    MW: 62850.6 Da    PI: 9.0895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020689genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.4e-161060150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                 +ri+++ +r+ ++ kR+ gilKK +ELS+LC+ae+av+++s ++ +++ ++
  DCAR_020689 10 SRINDDAKRKASLRKRQGGILKKVSELSILCGAEAAVVMYSADNnQFKVWP 60
                 589*************************************98751667676 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-16261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.876262IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-10424IPR002100Transcription factor, MADS-box
CDDcd002662.73E-24485No hitNo description
SuperFamilySSF554556.8E-19494IPR002100Transcription factor, MADS-box
PfamPF003196.0E-151154IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MAPRGQIALS RINDDAKRKA SLRKRQGGIL KKVSELSILC GAEAAVVMYS ADNNQFKVWP  60
SESEARATIK KFMSLPEEVR KKNSHTARSF LEEKCRKKKN KALRLIKMNE EKYVGALVVS  120
IYNGKRRFED IDVEEKKKVI SAVDKKKEEL IAHIQKLKRK EQQALNSPQV LLPAVNMPLG  180
KRGRNGININ GLMAGRDFNS PAAAHEELMN ISAKRREMTR RLHEPTYLGG MNQRAPRQPE  240
ALSRDVQMPP SIQMANGLDM NYLARGRNFT SPASLTYGQL MNFRANSLSM TQNLHGLTNF  300
SGQHPFTSNL SMEHPSLSTV PANSLNMTQS LHGPTVFSAG SVPNTSNYSL ISPCTRVHIG  360
EENFGMMKQH AHLPSLPLDY TLMNQSSNRF HMTDMLSEQM NFGEMMQQCL DKNKNELAIA  420
SLRTFIEDCE AEGLIQRGHP PQTLELPRRL GVPPTPHIQH EASSSNMIGD ECGWNIVSNI  480
VSTPATTTLD QITYGSDFRW NGLPASAELG QFNFDDGMRD VGWVDEDTAF EFGNAPPSHM  540
MEPAQESLNS LNFQMPSSSY LN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17998RKKNSHTARSFLEEKCRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256698.10.0PREDICTED: uncharacterized protein LOC108226263
TrEMBLA0A164WLL60.0A0A164WLL6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-17AGAMOUS-like 48