PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 254aa MW: 28152.8 Da PI: 6.0836 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43 | 7.5e-14 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eql Le+ + + +p ++e +++ k l + +++V++WFqNrR + ++ DCAR_020646 22 RPRWTPKQEQLVMLESIYSSgVVNPPKDETTRIRKLLeeygPVVDSNVFYWFQNRRSRSRR 82 89*****************99****************99999****************997 PP | |||||||
2 | Wus_type_Homeobox | 99.1 | 3.4e-32 | 21 | 83 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtP++eQ+ +Le++y+sG+++P+k+e++ri++ LeeyG + d NVfyWFQNr++R+r++ DCAR_020646 21 VRPRWTPKQEQLVMLESIYSSGVVNPPKDETTRIRKLLEEYGPVVDSNVFYWFQNRRSRSRRR 83 579**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.414 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-4 | 20 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-11 | 22 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-10 | 22 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-7 | 22 | 88 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEYRNDQIHQ GREGNGEAVS VRPRWTPKQE QLVMLESIYS SGVVNPPKDE TTRIRKLLEE 60 YGPVVDSNVF YWFQNRRSRS RRRTRQIQAK INREQAASHE SSGSTNAYEH QNSTSFTVPN 120 SGEQDFFSPV SSSCLGGGHF LSSSDPSLYG DNSSFYPTQV CYPGNERNSS DSTFHNTFSA 180 ETSNVHYQSG GLITVFINGV ATDVSMGPLD MKGMFGEQDL LLFHSSGVQV SNTCFSSSLQ 240 HGESYFLVPG ANQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254926.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A161YG67 | 0.0 | A0A161YG67_DAUCS; Uncharacterized protein | ||||
STRING | XP_009609298.1 | 6e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-42 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020646 |