PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020645
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 393aa    MW: 44322.2 Da    PI: 7.764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020645genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-1794139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed++l+d+v+ +G+ +W++Ia++++ gR++k+c++rw++ 
      DCAR_020645  94 RGHWRPHEDDRLKDLVAHYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 139
                      899*****************************.***********996 PP
2Myb_DNA-binding53.65.1e-17146189146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
      DCAR_020645 146 RRAFSKEEEERLLGAHRMYGNK-WALIARLFP-GRTDNAVKNHWHV 189
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.59589140IPR017930Myb domain
SMARTSM007177.1E-1493142IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2794187IPR009057Homeodomain-like
PfamPF002493.7E-1694139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2595147IPR009057Homeodomain-like
CDDcd001679.80E-1397138No hitNo description
PROSITE profilePS5129425.215141195IPR017930Myb domain
SMARTSM007175.6E-14145193IPR001005SANT/Myb domain
PfamPF002492.1E-14146188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-20148193IPR009057Homeodomain-like
CDDcd001673.27E-11148188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQRLNTSGGV NMCQDLNFDP SSLDPQAALS MEYLGLRDAG MGRFQMSNRV THAVLNEAQN  60
ENLLLNQQQH INADEDEDTE HRRNIGGHTK LCSRGHWRPH EDDRLKDLVA HYGPQNWNLI  120
AEKLQGRSGK SCRLRWFNQL DPKINRRAFS KEEEERLLGA HRMYGNKWAL IARLFPGRTD  180
NAVKNHWHVI MARVHREQNS IYRRRKPQLS FTHDNNTHVI PTLNQHDPHQ ILHNKTPSEY  240
STDVSSNTNI NNVGIHYYNK EDQYSAASTC TNLSLKLPTA SLSRFSPAHY HQHQPLFGSF  300
MGACTSSGDE VSKGMAMATL AAGGKGAVYE QCGGANSEDS NSEVVSVYAT DSVANNNAVN  360
LYNYMMYHGE VDQYDRKQKK IHFIDFLGVG GG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30941937106B-MYB
1gv2_A1e-30941934103MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-31941934103C-Myb DNA-Binding Domain
1msf_C9e-31941934103C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254925.10.0PREDICTED: myb-related protein 330
TrEMBLA0A161ZXU10.0A0A161ZXU1_DAUCS; Uncharacterized protein
STRINGXP_009782999.11e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-70myb domain protein 105