PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020385
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 586aa    MW: 65230.2 Da    PI: 7.0678
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020385genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.7e-5041331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp+G+rF+Ptdeel+++yL+ k++g + e+ +vi+evdi+k+ePwdLp  ++v++ ++ew+fF++rd+ky++g+r+nrat +gyWkatgkd+ ++s+ 
  DCAR_020385   4 LPVGYRFRPTDEELINHYLRLKINGFHKEV-DVIREVDICKCEPWDLPdlSMVESVDNEWFFFCPRDRKYQSGQRSNRATVAGYWKATGKDRFIKSTr 100
                  799************************999.99**************96447788899*************************************986 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++++g kktLvfy+grap+g++t+Wv+hey +
  DCAR_020385 101 GTNVIGRKKTLVFYTGRAPRGNRTHWVIHEYCA 133
                  6778***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-563156IPR003441NAC domain
PROSITE profilePS5100555.1564156IPR003441NAC domain
PfamPF023654.4E-255132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEPLPVGYRF RPTDEELINH YLRLKINGFH KEVDVIREVD ICKCEPWDLP DLSMVESVDN  60
EWFFFCPRDR KYQSGQRSNR ATVAGYWKAT GKDRFIKSTR GTNVIGRKKT LVFYTGRAPR  120
GNRTHWVIHE YCATEDALNG NHPGQSAFVI CRLFKKHDGK LDEVTESSNC DEYEQKVSSS  180
TVKLSAEDTQ SEQETPMSSP QAGVQSSRMK GDLDESIMNI FADNHITTDR RNNICPSNEA  240
TGHGMGNIPI QADKGMEIAL GDFSELQDLP GSKIFSPLHM QMSNEFGSVF FPNPVSFSYE  300
NMPVPFQYGS NSADMAAFLV SSGDCSSSRQ IPGINCEPQK CTNDHRDFVN TATGSCWESD  360
LEISQRRILT PAEMCSMPDG INQEGRRNVS FPQNASNSSA AVSVDDQVCN LQNLEESRTY  420
NNAVDGDDYT RTGIKIRPRQ TDNQAVARKI VLQGIASKRI RLQNKSRVRS ISRRLPKTLS  480
YDNEKCDARA SFIEARDADE HPATSTAASS RTDEFEGVSL AQSNYGGIVR KLPTRSTGKL  540
TNVPAVFLKK APVYCFASSY LHQWRILAAA GLVIVVAGIC GKLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-41415717166NO APICAL MERISTEM PROTEIN
1ut4_B4e-41415717166NO APICAL MERISTEM PROTEIN
1ut7_A4e-41415717166NO APICAL MERISTEM PROTEIN
1ut7_B4e-41415717166NO APICAL MERISTEM PROTEIN
3swm_A5e-41415720169NAC domain-containing protein 19
3swm_B5e-41415720169NAC domain-containing protein 19
3swm_C5e-41415720169NAC domain-containing protein 19
3swm_D5e-41415720169NAC domain-containing protein 19
3swp_A5e-41415720169NAC domain-containing protein 19
3swp_B5e-41415720169NAC domain-containing protein 19
3swp_C5e-41415720169NAC domain-containing protein 19
3swp_D5e-41415720169NAC domain-containing protein 19
4dul_A4e-41415717166NAC domain-containing protein 19
4dul_B4e-41415717166NAC domain-containing protein 19
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214894.10.0PREDICTED: NAC domain-containing protein 91
TrEMBLA0A161ZYE30.0A0A161ZYE3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.15e-83NAC domain containing protein 62