PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 26073.9 Da PI: 4.7229 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.3e-19 | 22 | 73 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ F+ + ++ +++ +LA++l+L+ rqV +WFqNrRa++k DCAR_020355 22 KRFSDEQIRSLESIFKLDTKLEPKKKIQLARELELQPRQVAIWFQNRRARWK 73 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.1 | 1e-37 | 21 | 111 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eq+++LE+ F+ ++kLep++K +lareL+lqprqva+WFqnrRAR+k+kqlE++y+aLk++yd+l+++ e L++e+e+L ++l++ DCAR_020355 21 TKRFSDEQIRSLESIFKLDTKLEPKKKIQLARELELQPRQVAIWFQNRRARWKSKQLEQEYRALKTNYDNLNSQFEFLKEEKESLLAQLQK 111 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-19 | 8 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-16 | 15 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 21 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-16 | 22 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.69E-15 | 24 | 76 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.5E-13 | 75 | 116 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEEEDLSSSF SVQRKKKNKN TKRFSDEQIR SLESIFKLDT KLEPKKKIQL ARELELQPRQ 60 VAIWFQNRRA RWKSKQLEQE YRALKTNYDN LNSQFEFLKE EKESLLAQLQ KLNEMLKEIH 120 STNEASKGLE ERSTNQGLDD ENNNSEIKAD TKTLTDTVDN CSIMHSDPDE RENTGGLLDQ 180 YQGAELLSFC QQLDGPLPPA ERWCNFGSGD ISDQACGNSN WWEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 75 | RRARWKSKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254682.1 | 1e-164 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A161ZYH0 | 1e-163 | A0A161ZYH0_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 3e-37 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020355 |