PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020298
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 346aa    MW: 38754.2 Da    PI: 7.5458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020298genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-16112162256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  +y+GVr++  +g ++AeIrdp++   + r +lg++gt+eeAa+ ++ ++ +l+g+
  DCAR_020298 112 RYRGVRYRA-WGTFAAEIRDPVK---KERRWLGTYGTPEEAARVYDTFAVSLRGA 162
                  7*****999.**********654...5999**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-9112161IPR001471AP2/ERF domain
SMARTSM003809.0E-24112175IPR001471AP2/ERF domain
PROSITE profilePS5103220.073112169IPR001471AP2/ERF domain
CDDcd000186.95E-24112168No hitNo description
Gene3DG3DSA:3.30.730.103.2E-24112169IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17112169IPR016177DNA-binding domain
PRINTSPR003671.6E-6113124IPR001471AP2/ERF domain
PRINTSPR003671.6E-6135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLMNDCNAVL PEKVTQHVNI TRKLTRPLPG QKTRRCLRKI VRITVTDHDA TDSSSDEEAE  60
VYYRRRVRKY VDIVRVEAGV ASPRKRKVSG NGKGCKQGKL ARRPVNDSSE RRYRGVRYRA  120
WGTFAAEIRD PVKKERRWLG TYGTPEEAAR VYDTFAVSLR GAKATTNFGN PSRGLKRLHS  180
NSSNESAEGS HQNALISPTT VLRNENQPLL EEAKDKGKGK EKVEVDTGKG KEKVEVEDGP  240
RREFDPMNSY KPMDNPFEDD YGFGSMEPIS LDNAPIFPNE EMLKINHDDK DLGIDPSFPF  300
PLNDGLSGAD LGFSYDMMYG IGATGSTSRV NDYDFEDSDF SLADD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-141121681471Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256740.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A161WUS50.0A0A161WUS5_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-29cytokinin response factor 4