PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020229
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 226aa    MW: 23916.5 Da    PI: 4.3
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020229genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-1662111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+G+r ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  DCAR_020229  62 PSYRGIR-CR-SGKWVSEIREPRK---TSRIWLGTYPTPEMAAAAYDVAALALKG 111
                  579***9.55.6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-1062111IPR001471AP2/ERF domain
CDDcd000185.02E-1762121No hitNo description
Gene3DG3DSA:3.30.730.104.2E-2763121IPR001471AP2/ERF domain
PROSITE profilePS5103220.23163119IPR001471AP2/ERF domain
SMARTSM003803.6E-2863125IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1863121IPR016177DNA-binding domain
PRINTSPR003671.4E-66475IPR001471AP2/ERF domain
PRINTSPR003671.4E-6101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MADSAHIPKN DQPESQSESE YCSNESSLSI LPPTASSEDP LLKPSPVAPS KMSLSPSSGR  60
HPSYRGIRCR SGKWVSEIRE PRKTSRIWLG TYPTPEMAAA AYDVAALALK GPDAALNFPD  120
SALSYVIPAN PTAADIRAAA ANAAASRACG GSGSTAGGDN PELPPPAENI NIPSETSEFI  180
DEEDIFDMPN LLADMAEGML ISPPRMKTDD SPEKEGDNLW SYPRN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255768.11e-161PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ903e-55ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A164WXM51e-160A0A164WXM5_DAUCS; Uncharacterized protein
STRINGXP_010278525.18e-60(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-45ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]