PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 28791.5 Da PI: 4.6709 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.2e-16 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +Wv+e+r+p++ ++r++lg+f tae+Aa+a++ a+ +l+g DCAR_020228 96 PVYRGVRSRN-PDKWVSEVREPNK---NTRIWLGTFPTAEMAARAHDVAAIALRG 146 68****9666.9******999843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-11 | 96 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 97 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-27 | 97 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-20 | 97 | 156 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.62E-28 | 98 | 156 | No hit | No description |
PRINTS | PR00367 | 1.2E-7 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDHFFSYSTS SYSAPPQDPY NYSSYPTSSY SAPPQDPCHY SSYPDSSFPT ETTGNAYGIG 60 NASDQPVHIP GDEVLLASSN PKKRDGRKKF KETRHPVYRG VRSRNPDKWV SEVREPNKNT 120 RIWLGTFPTA EMAARAHDVA AIALRGRGAC LNFADSAWRL PVPASTNAKD IQKAAAEAAE 180 AFRPQENDNA AERTSPEETY ASQANEVAYM DEEALFATPE YINSMAQGMM LSPPQFAQSD 240 MYYGNDDMDS VTDMSLWNY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255776.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 5e-71 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A161WV04 | 0.0 | A0A161WV04_DAUCS; Uncharacterized protein | ||||
STRING | XP_008234474.1 | 4e-83 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-70 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020228 |
Publications ? help Back to Top | |||
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