PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020068
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 541aa    MW: 59453.9 Da    PI: 8.9658
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020068genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11211267155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  DCAR_020068 211 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDCAALKYWG 267
                  78*******************77776664346655.77*****************987 PP
2AP2461.3e-14312361355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  DCAR_020068 312 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 361
                  9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-16211275No hitNo description
PfamPF008471.7E-8211267IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-13211276IPR016177DNA-binding domain
SMARTSM003801.7E-19212281IPR001471AP2/ERF domain
PROSITE profilePS5103216.476212275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-11212276IPR001471AP2/ERF domain
PRINTSPR003673.6E-6213224IPR001471AP2/ERF domain
CDDcd000188.50E-24310371No hitNo description
SuperFamilySSF541711.63E-17310370IPR016177DNA-binding domain
SMARTSM003801.2E-33311375IPR001471AP2/ERF domain
PROSITE profilePS5103219.177311369IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18311369IPR001471AP2/ERF domain
PfamPF008472.2E-9312361IPR001471AP2/ERF domain
PRINTSPR003673.6E-6351371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MNSSNSNSSA PNWLGFSLSP HLKTEDHYQP AAAAHNVSAS LYISASSNGM VSSSSPRLEN  60
FLGGGHHQYE SGIEKYHSLD IIQQPFSTQE EMQYLSGLTS QNIMYQTLPQ GEHREEGQVG  120
DWILGQHMIS SGLIVDVGSG SVGSMGCGDL QSLSLSMSPG SQSSCVTASR QISPTGTVCL  180
AMETKKRGSE KMGTKQPSHR KSLDAFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT  240
RKGRQGGYDM EEKAARAYDC AALKYWGVAT HINFQLENYQ QQLEEMKNMT RQEYVAHLRR  300
RSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  360
GVNAVTNFDI TRYDVEKIMA SNTLLAGELA RRNKDRETTN DAITTFVSPM KTNNEEGIQQ  420
GQNPSVLDWK VMQQKQNAAG QHYKDSAFSM ALQNLIGSET NSSQLTVNQA TKINNHHLST  480
PSSLVTSLSS SREGSPEKSG AAVIPFATPS IYSSWITSSQ SRAAQISAAN LPVFAAWNSS  540
*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254264.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-144CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A161WVH20.0A0A161WVH2_DAUCS; Uncharacterized protein
STRINGEOY156530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-113AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]