PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020065
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRF
Protein Properties Length: 570aa    MW: 62170.6 Da    PI: 7.9237
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020065genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-24202246145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  DCAR_020065 202 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHVNRGRHRSRKPVEG 246
                  79****************************************985 PP
2QLQ55.61.6e-19132168137
          QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  ++FT++Q+++L +Q+l+yKy+ an PvP++Ll +i+k
  DCAR_020065 132 GPFTPSQWMELQHQALIYKYITANSPVPSNLLNPIRK 168
                  59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-10132168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.018133168IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-15133167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563202246IPR014977WRC domain
PfamPF088791.1E-20203245IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDFGVDAVGF AASDTTTSTL FSDAPDAKLK LYGSGSFKQQ RSGEDEWKDF RKVAKMCNEN  60
AGDLYGSKNV LQERSSKSSS SLFSDGQMLS FSSPNLQPYS YFNGSSTSPY SRNGGYGSGG  120
LSSGNMHGIL TGPFTPSQWM ELQHQALIYK YITANSPVPS NLLNPIRKAL DSAGFSSFPG  180
AYLRPNTLGW GAFHLGFSNN TDPEPGRCRR TDGKKWRCSR DAVPDQKYCE RHVNRGRHRS  240
RKPVEGQSGH SVSGTTNTTA KFLPTSSASV VPANGTSNNI GLSHHQLNNL QHGASNPSAT  300
PHLNRNYPNK TSVDEKIQDR TGLSMLSSDI GLKENQFLTQ KQMNFYQEPS RSEFGLVCSD  360
SLLNPFQKST SMISYDSSKD IIDSQNKSQH SLRQFMDDWP KNQTEHSSIS WPAIDMQSDR  420
TQLSISIPMA ASDFMSSTSS PTNENRAVSP LRLSRDLDST QMGLGMNGMF SETDQRQANW  480
IPIAWENSMG GPLGEVLHST NNSADCNNAS ALNLMTEGWD SSPRLATSPT GVLQKTTFHS  540
LSNSSAGSSP RTENNLLGMH QLSSSMPTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017214746.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A161ZZ170.0A0A161ZZ17_DAUCS; Uncharacterized protein
STRINGEOY156570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.18e-92growth-regulating factor 1