PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18445.9 Da PI: 6.4961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.5e-41 | 7 | 107 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C++dC+++pyfp ++p++f +vh++FGasnv k+l++lp e r +a+++l+yeA++r+++PvyG+vg+i++l+qq+++++ ela+++ DCAR_020040 7 RCAACKYLRRRCPRDCIFSPYFPPTNPHRFSCVHRIFGASNVGKMLQQLPVELRGEAAETLYYEAQCRMENPVYGCVGIITQLHQQINEAERELARAQ 104 6***********************************************************************************************99 PP DUF260 99 eel 101 +++ DCAR_020040 105 AQI 107 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.104 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-41 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MNMNSGRCAA CKYLRRRCPR DCIFSPYFPP TNPHRFSCVH RIFGASNVGK MLQQLPVELR 60 GEAAETLYYE AQCRMENPVY GCVGIITQLH QQINEAEREL ARAQAQIAFH RHASNAHRPL 120 PQQDQLEVEP SAPEAVTDSS WLDQNEFDVS ALMSPLDPAW FL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 8 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 8 | 107 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017256774.1 | 1e-118 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 8e-51 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A164X235 | 1e-118 | A0A164X235_DAUCS; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1.339 | 3e-55 | (Carica papaya) | ||||
STRING | XP_004308220.1 | 3e-55 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-47 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020040 |